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View 99c8aa8
updates to testsMichael Lawrence authored on 17/08/2013 01:41:06 |
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View 59c3684
Refactor bam_tally, so that bam_tally returns a TallyIIT object, which is then summarized via summarizeVariants; this allows computing tallies once and summarizing them in different ways (like maybe get the coverage). The summarizeVariants function yields a VRanges.Michael Lawrence authored on 14/07/2013 00:43:43 |
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View 1a08f35
force all tests to build 12mer indices to save memory (and thus hopefully build on the Hutch build machines)Michael Lawrence authored on 09/03/2013 01:04:14 |
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View 6b50461
Add some ignores for generated files.Michael Lawrence authored on 24/11/2012 14:29:26 |
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View 1650977
Make 'genome' a BamTallyParam slot, instead of a bam_tally argument. This is consistent with GsnapParam. Also, rename 'high_quality_cutoff' to 'high_base_quality'.Michael Lawrence authored on 17/08/2012 20:19:50 |
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View b22faf0
renaming gmapR2 to gmapR: it lives againMichael Lawrence authored on 02/08/2012 22:24:24 |