May 3, 2016
Viewca9cadb

Creating branch for BioC 3.3 release.

Dan Tenenbaum authored on 03/05/2016 21:26:31
View3748356

Bump versions prior to creation of 3.3 branch

Dan Tenenbaum authored on 03/05/2016 21:20:18
April 5, 2016
Vieweb2c4af

one more adjustment in response to the 'vals' -> 'filter' renaming in GenomicFeatures

Herve Pages authored on 05/04/2016 23:53:00
View8b7fd7a

adjustments in response to the vals -> filter renaming in GenomicFeatures

Herve Pages authored on 05/04/2016 22:55:27
March 12, 2016
Viewc3d54b8

move Rsamtools to Depends to avoid masking of bamPaths()

Michael Lawrence authored on 12/03/2016 19:23:55
February 1, 2016
View12074fe

stream past XS counts for indels (even when XS counting is disabled)

Michael Lawrence authored on 01/02/2016 20:11:05
January 29, 2016
Viewd92a799

elementLengths was renamed -> elementNROWS in S4Vectors (new name reflects TRUE semantic, old name will be deprecated soon)

Herve Pages authored on 29/01/2016 01:22:03
December 7, 2015
View4f3d48a

re-enable maintainer mode toggling in gmap

Michael Lawrence authored on 07/12/2015 19:55:43
Viewd36ac68

make seqinfo setting robust to missing seqlevels

Michael Lawrence authored on 07/12/2015 03:40:40
December 5, 2015
Viewcb7ab58

fix single output case for GMAP

Michael Lawrence authored on 05/12/2015 15:00:00
View4a648a5

regenerate autotools stuff

Michael Lawrence authored on 05/12/2015 14:42:50
View676579c

re-add maintainer mode support to gstruct

Michael Lawrence authored on 05/12/2015 14:39:13
Viewff0b3d9

disable maintainer mode for gsnap

Michael Lawrence authored on 05/12/2015 14:20:35
View8db42dc

So let's try to support gmapR again on Mac. See:

Herve Pages authored on 05/12/2015 00:34:38
December 3, 2015
Viewf053c5f

general cleanup and fixes, doc updates

Michael Lawrence authored on 03/12/2015 21:11:09