Bioconductor Code: gmapR

October 31, 2011

	View 30c26df Creating branch for BioC 2.9 release. Dan Tenenbaum authored on 31/10/2011 23:05:58

October 19, 2011

	View 88416b4 Restrict BAM selection to those known to be output by gsnap Michael Lawrence authored on 19/10/2011 22:39:05

October 14, 2011

	View 3d70bd0 Need to suggest RUnit because of unit tests. Herve Pages authored on 14/10/2011 22:18:17

October 10, 2011

	View b6683ab Bump version, clean up DESCRIPTION Michael Lawrence authored on 10/10/2011 18:15:29

October 6, 2011

	View d3241fa Add GsnapOutput class, for use with gmapQA Michael Lawrence authored on 06/10/2011 20:28:33

September 23, 2011

	View 4870f3f added TODO Cory Barr authored on 23/09/2011 18:02:46
	View 51b9e69 removed installGmap.R. Functionality now in configureGmap.R Cory Barr authored on 23/09/2011 02:13:10
	View 5de8c9d *alterations to script to install hg19, its splice sites, and dbSNP Cory Barr authored on 23/09/2011 02:12:38

September 21, 2011

	View ac99a3e fixed wrong param passed in installGmapR.R script Cory Barr authored on 21/09/2011 11:54:22
	View f746b95 *decoupled HTSeqGenieBase from gmapR. Should not have to load HTSeqGenieBase. Might cause problems at present if you do. Cory Barr authored on 21/09/2011 11:48:06

September 16, 2011

	View 7c724f5 fixed typo: retriveGenomeFasta now defined as retrieveGenomeFasta Cory Barr authored on 16/09/2011 09:00:06
	View a006485 Use dirname() instead of basename(). Herve Pages authored on 16/09/2011 06:58:20
	View c53268d Modify buildGmapSpliceSites(), buildGmapIITFromFasta(), buildGsnapSNPIIT(), buildGmapIndex() and buildGmapDb(), so they don't delete tempdir() before they return. Herve Pages authored on 16/09/2011 06:47:13
	View 9b95135 Modify installGmap() so it doesn't delete tempdir() before it returns. Herve Pages authored on 16/09/2011 06:23:24

September 15, 2011

	View 74b2867 ran roxygen to regenerate collate field in DESCRIPTION Cory Barr authored on 15/09/2011 00:36:55