March 10, 2014
Viewdc71e3a

Port change from devel that prevents conflict between cached TP53 genomes

Michael Lawrence authored on 10/03/2014 23:32:24
February 28, 2014
Viewe376c14

merge seqinfo from bam and genome during tallying (port from devel)

Michael Lawrence authored on 28/02/2014 21:28:07
January 15, 2014
View3d484fd

new bam_tally trunk containing critical bug fixes

Michael Lawrence authored on 15/01/2014 22:03:28
October 29, 2013
View0c12fda

port fixes related to gstruct maintainer mode from devel

Michael Lawrence authored on 29/10/2013 18:11:55
October 28, 2013
View5f99a98

fix mistake in calculation of indel ranges; insertion positions were of the insertion itself, not of the reference base upstream.

Michael Lawrence authored on 28/10/2013 21:26:40
October 15, 2013
Viewb183940

update NEWS

Michael Lawrence authored on 15/10/2013 12:44:35
October 14, 2013
View5c28c3f

Creating branch for BioC 2.13 release.

Dan Tenenbaum authored on 14/10/2013 21:43:43
Viewee93b42

bump versions prior to creating BioC 2.13 branch

Dan Tenenbaum authored on 14/10/2013 21:29:21
View0c27085

doc updates/fixes

Michael Lawrence authored on 14/10/2013 18:52:22
View1867ab0

labeledLine moved to BiocGenerics

Michael Lawrence authored on 14/10/2013 18:51:25
September 25, 2013
View05eefee

call Rcode{} instead of code{}

Dan Tenenbaum authored on 25/09/2013 20:07:03
September 20, 2013
View4d5cc80

update to latest gstruct; brings faster bam_tally (for high coverage regions) and read-group filtering support in bam_tally

Michael Lawrence authored on 20/09/2013 02:05:42
View6bf0a27

suppressWarnings on the read.table in Seqinfo,GmapGenome; complained about colClasses being too long (for older indexes) even when fill=TRUE.

Michael Lawrence authored on 20/09/2013 02:03:57
September 16, 2013
Viewe0faa99

support circular flag in seqinfo,GmapGenome

Michael Lawrence authored on 16/09/2013 23:22:09
September 10, 2013
View49d3788

version bump, 1.3.8

Michael Lawrence authored on 10/09/2013 21:52:34