October 1, 2012
Viewe8f71fa

Creating branch for BioC 2.11 release.

Dan Tenenbaum authored on 01/10/2012 22:37:11
View1ef2639

Bump all packages before creating 2.11 branch.

Dan Tenenbaum authored on 01/10/2012 22:16:24
September 30, 2012
Viewdbda16a

Fix unitialized row count in variant summary C routine.

Michael Lawrence authored on 30/09/2012 19:40:38
September 29, 2012
View7afec90

drop import of parallel package, as we apparently do not use it?

Michael Lawrence authored on 29/09/2012 04:03:09
September 28, 2012
View3190b2e

refer to txTP53 in unit test instead of undeclared tx

Dan Tenenbaum authored on 28/09/2012 01:23:00
September 26, 2012
View2ed0e62

added test for spliceSites<- method

Cory Barr authored on 26/09/2012 21:22:34
September 25, 2012
Viewb235285

version bump; add Tom to authors.

Michael Lawrence authored on 25/09/2012 16:00:44
View3f89995

Decoupling the bam tallying from summarization. Soon, we will return an IIT, which can be summarized in various ways. Currently, the only way is the variant summary.

Michael Lawrence authored on 25/09/2012 16:00:17
September 19, 2012
View6848f01

added tests for batch and part gsnap function args

Cory Barr authored on 19/09/2012 00:41:02
Viewedbb83b

added test suite for gsnap command

Cory Barr authored on 19/09/2012 00:23:26
View8600ee5

removed option to turn off BAM compression, does not work

Cory Barr authored on 19/09/2012 00:18:48
September 18, 2012
Viewaec742f

GsnapParam docs for 'mode' arg described valuse from old version of gsnap

Cory Barr authored on 18/09/2012 21:41:05
Viewc1d38fc

unit tests added for gsnap with varying parameters

Cory Barr authored on 18/09/2012 21:40:12
September 14, 2012
View9f41c85

added support to have bams not sorted

Cory Barr authored on 14/09/2012 23:17:11
September 12, 2012
View5ed9345

added aliases to remove last of WARNINGs

Cory Barr authored on 12/09/2012 23:25:14