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Creating branch for BioC 2.11 release.Dan Tenenbaum authored on 01/10/2012 22:37:11 |
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Bump all packages before creating 2.11 branch.Dan Tenenbaum authored on 01/10/2012 22:16:24 |
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Fix unitialized row count in variant summary C routine.Michael Lawrence authored on 30/09/2012 19:40:38 |
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drop import of parallel package, as we apparently do not use it?Michael Lawrence authored on 29/09/2012 04:03:09 |
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refer to txTP53 in unit test instead of undeclared txDan Tenenbaum authored on 28/09/2012 01:23:00 |
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added test for spliceSites<- methodCory Barr authored on 26/09/2012 21:22:34 |
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version bump; add Tom to authors.Michael Lawrence authored on 25/09/2012 16:00:44 |
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Decoupling the bam tallying from summarization. Soon, we will return an IIT, which can be summarized in various ways. Currently, the only way is the variant summary.Michael Lawrence authored on 25/09/2012 16:00:17 |
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added tests for batch and part gsnap function argsCory Barr authored on 19/09/2012 00:41:02 |
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added test suite for gsnap commandCory Barr authored on 19/09/2012 00:23:26 |
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removed option to turn off BAM compression, does not workCory Barr authored on 19/09/2012 00:18:48 |
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GsnapParam docs for 'mode' arg described valuse from old version of gsnapCory Barr authored on 18/09/2012 21:41:05 |
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unit tests added for gsnap with varying parametersCory Barr authored on 18/09/2012 21:40:12 |
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added support to have bams not sortedCory Barr authored on 14/09/2012 23:17:11 |
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added aliases to remove last of WARNINGsCory Barr authored on 12/09/2012 23:25:14 |