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fix warning on NULL gsnap(input_b=)Michael Lawrence authored on 09/05/2019 17:18:57 |
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View 3854987
vectorize over 'output'Michael Lawrence authored on 17/05/2017 20:11:24 |
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follow renaming of union classes in S4VectorsHerve Pages authored on 01/02/2017 13:23:02 |
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add ability to call GMAPMichael Lawrence authored on 23/11/2015 23:25:34 |
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gsnap() derives default output path from the current working directoryMichael Lawrence authored on 14/01/2014 19:12:06 |
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gsnap will now output a GsnapOutputList when there are multiple input files; this means that the return value is more dependent on the input than we may like; perhaps we want a FastqFile and FastqFileList to make this more consistent?Michael Lawrence authored on 23/08/2013 14:22:00 |
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fix gsnap for when unique_only is TRUEMichael Lawrence authored on 15/07/2013 23:39:06 |
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View 273e823
Add low-level ..gsnap() interface to gsnap that accepts an argument string (instead of building that string from its formal arguments, like .gsnap). Also checks for whether gsnap succeeds.Michael Lawrence authored on 28/02/2013 23:03:33 |
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fix gsnap() to take return value from asBamMichael Lawrence authored on 09/11/2012 12:55:36 |
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removed option to turn off BAM compression, does not workCory Barr authored on 19/09/2012 00:18:48 |
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added support to have bams not sortedCory Barr authored on 14/09/2012 23:17:11 |
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View 297de88
*gmapR option name for returning system calls is now "systemCallMode"Cory Barr authored on 11/09/2012 22:12:30 |
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Fix the novesplicing flag to gsnapMichael Lawrence authored on 11/09/2012 18:50:23 |
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View 1116df9
added capability to overwrite .system via providing a function to options('gmapRSysCall')Cory Barr authored on 11/09/2012 02:32:47 |
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View 835aba9
Fix output_path when split_output is FALSEMichael Lawrence authored on 07/09/2012 22:03:43 |