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View685d60e
work towards supporting new bam_tally; drops quality info (now cutoff based), adds xs/nm/del and codon-level countsMichael Lawrence authored on 13/11/2015 21:50:11 |
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Viewf51bc89
Update gstruct (bam_tally)Michael Lawrence authored on 28/10/2015 20:55:30 |
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View8418591
resurrect improvements that we reverted before the April release, expect breakage for a whileMichael Lawrence authored on 28/10/2015 18:51:00 |
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Viewd5ed124
Reverted to r101133, along with NAMESPACE fixesMichael Lawrence authored on 14/04/2015 21:40:44 |
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Viewc8fd96e
Recent work towards supporting the new features... will revert back to a stable version immediately...Michael Lawrence authored on 14/04/2015 21:32:10 |
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Viewf58d4e9
update gstruct/bamtallyMichael Lawrence authored on 25/03/2015 20:25:05 |
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View52563ef
incorporate Tom's bugfix to bamtally when there are no reads at a position. Fixes segfault in R CMD check VariantToolsGabriel Becker authored on 26/08/2014 20:33:39 |
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Viewc78be69
add codon tally support. No vbump yetGabriel Becker authored on 11/08/2014 23:42:48 |
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View52b3ca6
update gstruct (hopefully fix build)Michael Lawrence authored on 06/06/2014 22:10:15 |
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View2a4fd1e
update ignoresMichael Lawrence authored on 04/06/2014 23:34:39 |
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Viewf5e63d3
update to new bam_tally with support for XS counting, which we now support via BamTallyParam@count_xs.Michael Lawrence authored on 13/05/2014 02:04:05 |
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View9f0e3a7
bam_tally has reworked memory management to avoid memory "leaks" that seem to happen on our clusterMichael Lawrence authored on 05/05/2014 21:02:45 |
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View144f6bb
update bam_tally, mostly to fix memory leaks but we are also moving towards a decent indel realignerMichael Lawrence authored on 30/04/2014 17:04:17 |
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View17db5e7
update GSTRUCT (bam_tally); add include_soft_clip parameter for counting over soft clips of a given max length (more accurate allele frequency)Michael Lawrence authored on 02/04/2014 22:03:40 |
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Viewd78ea58
update bam_tally source for fix to quality tabulationMichael Lawrence authored on 15/01/2014 21:39:44 |