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View 5659f09
add raw total count statistic to tallies (everything else now qual filtered)Michael Lawrence authored on 24/11/2015 22:19:59 |
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View 38518dd
fixes for bam_tally updateMichael Lawrence authored on 13/11/2015 22:40:27 |
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View 685d60e
work towards supporting new bam_tally; drops quality info (now cutoff based), adds xs/nm/del and codon-level countsMichael Lawrence authored on 13/11/2015 21:50:11 |
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View 8418591
resurrect improvements that we reverted before the April release, expect breakage for a whileMichael Lawrence authored on 28/10/2015 18:51:00 |
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View d5ed124
Reverted to r101133, along with NAMESPACE fixesMichael Lawrence authored on 14/04/2015 21:40:44 |
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View c8fd96e
Recent work towards supporting the new features... will revert back to a stable version immediately...Michael Lawrence authored on 14/04/2015 21:32:10 |
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View e01ded3
just some reformatting / cleanupMichael Lawrence authored on 25/03/2015 02:12:41 |
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View c78be69
add codon tally support. No vbump yetGabriel Becker authored on 11/08/2014 23:42:48 |
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View f5e63d3
update to new bam_tally with support for XS counting, which we now support via BamTallyParam@count_xs.Michael Lawrence authored on 13/05/2014 02:04:05 |
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View 96cf993
re-add counting of unique read positions (convenient when dupes are not marked) and fix an uninitialized value (param.cycle_breaks) detected by valgrindMichael Lawrence authored on 02/05/2014 12:51:58 |
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View 30f3bfd
drop the unique read position counts; renamed count.pos/count.neg to count.plus/count.minus (way better names)Michael Lawrence authored on 04/04/2014 13:36:22 |
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View ae7cf39
bring back the unique read position count, and mean/variance of read positionsMichael Lawrence authored on 04/04/2014 13:16:32 |
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View 18fc48e
remove some unnnecessary code from tally summarizationMichael Lawrence authored on 18/02/2014 21:37:13 |
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View 1beda81
drop unique read position count and mean/variance of read positions from statistics output by bam_tallyMichael Lawrence authored on 18/02/2014 21:24:22 |
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View 849b745
woops, fix seg-fault when read length not passed to bam_tallyMichael Lawrence authored on 07/02/2014 01:10:55 |