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View5659f09
add raw total count statistic to tallies (everything else now qual filtered)Michael Lawrence authored on 24/11/2015 22:19:59 |
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Viewf51bc89
Update gstruct (bam_tally)Michael Lawrence authored on 28/10/2015 20:55:30 |
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View8418591
resurrect improvements that we reverted before the April release, expect breakage for a whileMichael Lawrence authored on 28/10/2015 18:51:00 |
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Viewd5ed124
Reverted to r101133, along with NAMESPACE fixesMichael Lawrence authored on 14/04/2015 21:40:44 |
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Viewf58d4e9
update gstruct/bamtallyMichael Lawrence authored on 25/03/2015 20:25:05 |
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Viewb0aa06a
fix checkin of codontally codeGabriel Becker authored on 13/08/2014 21:49:41 |
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Viewc78be69
add codon tally support. No vbump yetGabriel Becker authored on 11/08/2014 23:42:48 |
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View52b3ca6
update gstruct (hopefully fix build)Michael Lawrence authored on 06/06/2014 22:10:15 |
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View144f6bb
update bam_tally, mostly to fix memory leaks but we are also moving towards a decent indel realignerMichael Lawrence authored on 30/04/2014 17:04:17 |
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View17db5e7
update GSTRUCT (bam_tally); add include_soft_clip parameter for counting over soft clips of a given max length (more accurate allele frequency)Michael Lawrence authored on 02/04/2014 22:03:40 |
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View3a231c3
update bam_tally to fix counting issue with some range-restricted queriesMichael Lawrence authored on 14/01/2014 19:15:57 |
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View4d5cc80
update to latest gstruct; brings faster bam_tally (for high coverage regions) and read-group filtering support in bam_tallyMichael Lawrence authored on 20/09/2013 02:05:42 |
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View95e6ece
Update gstruct; bam_tally now supports ignoring PCR/optical duplicates.Michael Lawrence authored on 26/03/2013 21:37:34 |
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View36cb64f
added new version of gmap and gstruct src codeCory Barr authored on 10/10/2012 00:38:59 |
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View5fa057e
removing old gstruct and gmap src code before adding new srcCory Barr authored on 10/10/2012 00:34:30 |