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View 2a4fd1e
update ignoresMichael Lawrence authored on 04/06/2014 23:34:39 |
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View f5e63d3
update to new bam_tally with support for XS counting, which we now support via BamTallyParam@count_xs.Michael Lawrence authored on 13/05/2014 02:04:05 |
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View 9f0e3a7
bam_tally has reworked memory management to avoid memory "leaks" that seem to happen on our clusterMichael Lawrence authored on 05/05/2014 21:02:45 |
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View 144f6bb
update bam_tally, mostly to fix memory leaks but we are also moving towards a decent indel realignerMichael Lawrence authored on 30/04/2014 17:04:17 |
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View 1beff33
fix disable-maintainer-modeMichael Lawrence authored on 02/04/2014 22:35:46 |
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View 17db5e7
update GSTRUCT (bam_tally); add include_soft_clip parameter for counting over soft clips of a given max length (more accurate allele frequency)Michael Lawrence authored on 02/04/2014 22:03:40 |
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View d78ea58
update bam_tally source for fix to quality tabulationMichael Lawrence authored on 15/01/2014 21:39:44 |
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View e1cb9b2
refresh a few more files for maintainer modeMichael Lawrence authored on 14/01/2014 19:49:41 |
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View 3a231c3
update bam_tally to fix counting issue with some range-restricted queriesMichael Lawrence authored on 14/01/2014 19:15:57 |
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View d8f035d
update Makefile.in's for gstructMichael Lawrence authored on 28/10/2013 18:54:55 |
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View 4d5cc80
update to latest gstruct; brings faster bam_tally (for high coverage regions) and read-group filtering support in bam_tallyMichael Lawrence authored on 20/09/2013 02:05:42 |
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View 00a095d
config.h should not be in VC, just config.h.inMichael Lawrence authored on 23/08/2013 14:10:17 |
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View a62c0bc
synchronize Makefile.in filesMichael Lawrence authored on 02/08/2013 20:04:01 |
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View 21bff03
sync configure script with configure.acMichael Lawrence authored on 02/08/2013 18:53:05 |
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View 95e6ece
Update gstruct; bam_tally now supports ignoring PCR/optical duplicates.Michael Lawrence authored on 26/03/2013 21:37:34 |