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View ead94b3
add ability to call GMAPMichael Lawrence authored on 23/11/2015 23:25:34 |
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View 8418591
resurrect improvements that we reverted before the April release, expect breakage for a whileMichael Lawrence authored on 28/10/2015 18:51:00 |
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View d5ed124
Reverted to r101133, along with NAMESPACE fixesMichael Lawrence authored on 14/04/2015 21:40:44 |
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View c9319fc
screw it, just import all of GenomeInfoDbMichael Lawrence authored on 26/03/2015 23:26:42 |
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View ca61e3d
import Seqinfo from GenomeInfoDbMichael Lawrence authored on 26/03/2015 23:22:03 |
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View 3f46e6a
import seqinfo and seqlengths from GenomeInfoDbMichael Lawrence authored on 25/03/2015 23:20:27 |
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View c78be69
add codon tally support. No vbump yetGabriel Becker authored on 11/08/2014 23:42:48 |
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View c0cce6c
follow renaming of TranscriptDb class -> TxDbHerve Pages authored on 28/07/2014 23:15:59 |
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View 6cca01e
resync with latest changes in GenomicRanges/GenomeInfoDbHerve Pages authored on 02/05/2014 23:12:32 |
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View f7ab666
resync with stuff moving from IRanges to S4VectorsHerve Pages authored on 18/04/2014 15:04:25 |
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View 30f3bfd
drop the unique read position counts; renamed count.pos/count.neg to count.plus/count.minus (way better names)Michael Lawrence authored on 04/04/2014 13:36:22 |
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View fab13f0
TP53 genome is now named by the TxDb package from which the TP53 region was retrieved, so that it is automatically refreshed with annotation changes, and devel and release can coexist.Michael Lawrence authored on 10/03/2014 23:10:51 |
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View 9b877fe
import altDepth/refDepthMichael Lawrence authored on 13/02/2014 18:55:50 |
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View 6b077cc
better to not import readBamGappedAlignments at all (it's defunct)Herve Pages authored on 08/11/2013 22:10:44 |
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View f561cd9
Import readGAlignmentsFromBam from new GenomicAlignments package instead of Rsamtools (even though gmapR doesn't seem to use it internally).Herve Pages authored on 08/11/2013 22:07:43 |