November 24, 2015
View 5659f09

add raw total count statistic to tallies (everything else now qual filtered)

Michael Lawrence authored on 24/11/2015 22:19:59
November 23, 2015
View ead94b3

add ability to call GMAP

Michael Lawrence authored on 23/11/2015 23:25:34
November 20, 2015
View b8e2b22

let users pass a 'param' when building a GmapGenome from a FaFile

Michael Lawrence authored on 20/11/2015 12:24:09
November 19, 2015
View 2332d26

add untested support for FaFile=>GmapGenome

Michael Lawrence authored on 19/11/2015 18:51:30
November 13, 2015
View 38518dd

fixes for bam_tally update

Michael Lawrence authored on 13/11/2015 22:40:27
View 685d60e

work towards supporting new bam_tally; drops quality info (now cutoff based), adds xs/nm/del and codon-level counts

Michael Lawrence authored on 13/11/2015 21:50:11
November 2, 2015
View f18ff85

more robust check for empty read pos breaks

Michael Lawrence authored on 02/11/2015 22:42:05
View bfeb9ea

fix forwarding args to TallyIIT

Michael Lawrence authored on 02/11/2015 21:40:00
October 28, 2015
View a5e0518

various hacks to get the source code updater to work for me

Michael Lawrence authored on 28/10/2015 20:56:15
View f51bc89

Update gstruct (bam_tally)

Michael Lawrence authored on 28/10/2015 20:55:30
View a49cb8d

Makefile cleanup

Michael Lawrence authored on 28/10/2015 20:53:26
View 8418591

resurrect improvements that we reverted before the April release, expect breakage for a while

Michael Lawrence authored on 28/10/2015 18:51:00
October 13, 2015
View 1f42582

Bumped version number of all packages after creation of 3.2 branch.

Dan Tenenbaum authored on 13/10/2015 19:59:53
View e4a80ba

Bumped versions of all packages prior to creating 3.2 branch.

Dan Tenenbaum authored on 13/10/2015 19:36:05
August 7, 2015
View 093e455

labeledLine() was moved from BiocGenerics to S4Vectors

Herve Pages authored on 07/08/2015 23:37:20