Bioconductor Code: Browse

August 11, 2014

	View c78be69 add codon tally support. No vbump yet Gabriel Becker authored on 11/08/2014 23:42:48

July 3, 2014

	View d71517d once again, disable maintainer mode for gstruct Michael Lawrence authored on 03/07/2014 23:40:24

June 6, 2014

	View 52b3ca6 update gstruct (hopefully fix build) Michael Lawrence authored on 06/06/2014 22:10:15

June 4, 2014

	View 2a4fd1e update ignores Michael Lawrence authored on 04/06/2014 23:34:39

May 13, 2014

	View f5e63d3 update to new bam_tally with support for XS counting, which we now support via BamTallyParam@count_xs. Michael Lawrence authored on 13/05/2014 02:04:05

May 5, 2014

	View 9f0e3a7 bam_tally has reworked memory management to avoid memory "leaks" that seem to happen on our cluster Michael Lawrence authored on 05/05/2014 21:02:45

April 30, 2014

	View 144f6bb update bam_tally, mostly to fix memory leaks but we are also moving towards a decent indel realigner Michael Lawrence authored on 30/04/2014 17:04:17

April 2, 2014

	View 1beff33 fix disable-maintainer-mode Michael Lawrence authored on 02/04/2014 22:35:46
	View 17db5e7 update GSTRUCT (bam_tally); add include_soft_clip parameter for counting over soft clips of a given max length (more accurate allele frequency) Michael Lawrence authored on 02/04/2014 22:03:40

January 15, 2014

	View d78ea58 update bam_tally source for fix to quality tabulation Michael Lawrence authored on 15/01/2014 21:39:44

January 14, 2014

	View e1cb9b2 refresh a few more files for maintainer mode Michael Lawrence authored on 14/01/2014 19:49:41
	View 8210aca fix maintainer mode for gstruct Michael Lawrence authored on 14/01/2014 19:42:22
	View 3a231c3 update bam_tally to fix counting issue with some range-restricted queries Michael Lawrence authored on 14/01/2014 19:15:57

October 28, 2013

	View d8f035d update Makefile.in's for gstruct Michael Lawrence authored on 28/10/2013 18:54:55
	View 5860f9f refresh gstruct configure Michael Lawrence authored on 28/10/2013 18:47:10