November 14, 2016
View55d77a1

update to latest GSTRUCT

Michael Lawrence authored on 14/11/2016 21:54:30
November 13, 2015
View38518dd

fixes for bam_tally update

Michael Lawrence authored on 13/11/2015 22:40:27
View685d60e

work towards supporting new bam_tally; drops quality info (now cutoff based), adds xs/nm/del and codon-level counts

Michael Lawrence authored on 13/11/2015 21:50:11
October 28, 2015
View8418591

resurrect improvements that we reverted before the April release, expect breakage for a while

Michael Lawrence authored on 28/10/2015 18:51:00
April 14, 2015
Viewd5ed124

Reverted to r101133, along with NAMESPACE fixes

Michael Lawrence authored on 14/04/2015 21:40:44
Viewc8fd96e

Recent work towards supporting the new features... will revert back to a stable version immediately...

Michael Lawrence authored on 14/04/2015 21:32:10
March 25, 2015
Viewf58d4e9

update gstruct/bamtally

Michael Lawrence authored on 25/03/2015 20:25:05
August 14, 2014
Viewcfb01d1

some fiddling, disable maintainer mode, vbump

Gabriel Becker authored on 14/08/2014 20:39:03
August 11, 2014
Viewc78be69

add codon tally support. No vbump yet

Gabriel Becker authored on 11/08/2014 23:42:48
May 13, 2014
Viewf5e63d3

update to new bam_tally with support for XS counting, which we now support via BamTallyParam@count_xs.

Michael Lawrence authored on 13/05/2014 02:04:05
April 30, 2014
View6d5d75f

add support for the noncovered argument; tells bam_tally to report even those positions that have no coverage

Michael Lawrence authored on 30/04/2014 17:05:27
April 2, 2014
View17db5e7

update GSTRUCT (bam_tally); add include_soft_clip parameter for counting over soft clips of a given max length (more accurate allele frequency)

Michael Lawrence authored on 02/04/2014 22:03:40
January 14, 2014
View3a231c3

update bam_tally to fix counting issue with some range-restricted queries

Michael Lawrence authored on 14/01/2014 19:15:57
September 20, 2013
View4d5cc80

update to latest gstruct; brings faster bam_tally (for high coverage regions) and read-group filtering support in bam_tally

Michael Lawrence authored on 20/09/2013 02:05:42
March 27, 2013
Viewa2a29ed

Add <stdlib.h> include to solve undefined off_t issue.

Michael Lawrence authored on 27/03/2013 19:58:06