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View 144f6bb
update bam_tally, mostly to fix memory leaks but we are also moving towards a decent indel realignerMichael Lawrence authored on 30/04/2014 17:04:17 |
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View 30f3bfd
drop the unique read position counts; renamed count.pos/count.neg to count.plus/count.minus (way better names)Michael Lawrence authored on 04/04/2014 13:36:22 |
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View 0113a37
remove old config scriptMichael Lawrence authored on 04/04/2014 13:35:07 |
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View ae7cf39
bring back the unique read position count, and mean/variance of read positionsMichael Lawrence authored on 04/04/2014 13:16:32 |
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View 1beff33
fix disable-maintainer-modeMichael Lawrence authored on 02/04/2014 22:35:46 |
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View 17db5e7
update GSTRUCT (bam_tally); add include_soft_clip parameter for counting over soft clips of a given max length (more accurate allele frequency)Michael Lawrence authored on 02/04/2014 22:03:40 |
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View 35ef817
update GMAP/GSNAP to 2013-10-1 branch; MAJOR optimizations.Michael Lawrence authored on 02/04/2014 21:21:47 |
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View 18fc48e
remove some unnnecessary code from tally summarizationMichael Lawrence authored on 18/02/2014 21:37:13 |
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View 1beda81
drop unique read position count and mean/variance of read positions from statistics output by bam_tallyMichael Lawrence authored on 18/02/2014 21:24:22 |
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View 849b745
woops, fix seg-fault when read length not passed to bam_tallyMichael Lawrence authored on 07/02/2014 01:10:55 |
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View 7c26346
add calculation of median-distance-from-nearest-end to variantSummary()Michael Lawrence authored on 07/02/2014 01:07:22 |
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View d78ea58
update bam_tally source for fix to quality tabulationMichael Lawrence authored on 15/01/2014 21:39:44 |
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View 2dd24f7
disable binariesMichael Lawrence authored on 14/01/2014 23:15:13 |
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View acf9e19
temporarily enable bam_tally binaryMichael Lawrence authored on 14/01/2014 22:47:21 |
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View e1cb9b2
refresh a few more files for maintainer modeMichael Lawrence authored on 14/01/2014 19:49:41 |