March 25, 2015
View e01ded3

just some reformatting / cleanup

Michael Lawrence authored on 25/03/2015 02:12:41
February 12, 2015
View 03e8ca6

Drop some compiler/pp flags

Michael Lawrence authored on 12/02/2015 21:44:00
October 11, 2014
View 796d80e

delete some unneeded? gstruct src files

Michael Lawrence authored on 11/10/2014 20:34:23
August 26, 2014
View 52563ef

incorporate Tom's bugfix to bamtally when there are no reads at a position. Fixes segfault in R CMD check VariantTools

Gabriel Becker authored on 26/08/2014 20:33:39
August 14, 2014
View cfb01d1

some fiddling, disable maintainer mode, vbump

Gabriel Becker authored on 14/08/2014 20:39:03
View 6cc263e

seems to work now. Something weird going on, needs -O0 when building gstruct

Gabriel Becker authored on 14/08/2014 19:13:43
August 13, 2014
View b0aa06a

fix checkin of codontally code

Gabriel Becker authored on 13/08/2014 21:49:41
August 11, 2014
View c78be69

add codon tally support. No vbump yet

Gabriel Becker authored on 11/08/2014 23:42:48
July 3, 2014
View d71517d

once again, disable maintainer mode for gstruct

Michael Lawrence authored on 03/07/2014 23:40:24
June 6, 2014
View 52b3ca6

update gstruct (hopefully fix build)

Michael Lawrence authored on 06/06/2014 22:10:15
June 4, 2014
View 2a4fd1e

update ignores

Michael Lawrence authored on 04/06/2014 23:34:39
May 13, 2014
View f5e63d3

update to new bam_tally with support for XS counting, which we now support via BamTallyParam@count_xs.

Michael Lawrence authored on 13/05/2014 02:04:05
May 5, 2014
View 9f0e3a7

bam_tally has reworked memory management to avoid memory "leaks" that seem to happen on our cluster

Michael Lawrence authored on 05/05/2014 21:02:45
May 2, 2014
View 96cf993

re-add counting of unique read positions (convenient when dupes are not marked) and fix an uninitialized value (param.cycle_breaks) detected by valgrind

Michael Lawrence authored on 02/05/2014 12:51:58
April 30, 2014
View 6d5d75f

add support for the noncovered argument; tells bam_tally to report even those positions that have no coverage

Michael Lawrence authored on 30/04/2014 17:05:27