May 3, 2016
View 3748356

Bump versions prior to creation of 3.3 branch

Dan Tenenbaum authored on 03/05/2016 21:20:18
April 5, 2016
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one more adjustment in response to the 'vals' -> 'filter' renaming in GenomicFeatures

Herve Pages authored on 05/04/2016 23:53:00
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adjustments in response to the vals -> filter renaming in GenomicFeatures

Herve Pages authored on 05/04/2016 22:55:27
March 12, 2016
View c3d54b8

move Rsamtools to Depends to avoid masking of bamPaths()

Michael Lawrence authored on 12/03/2016 19:23:55
February 1, 2016
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stream past XS counts for indels (even when XS counting is disabled)

Michael Lawrence authored on 01/02/2016 20:11:05
January 29, 2016
View d92a799

elementLengths was renamed -> elementNROWS in S4Vectors (new name reflects TRUE semantic, old name will be deprecated soon)

Herve Pages authored on 29/01/2016 01:22:03
December 7, 2015
View 4f3d48a

re-enable maintainer mode toggling in gmap

Michael Lawrence authored on 07/12/2015 19:55:43
View d36ac68

make seqinfo setting robust to missing seqlevels

Michael Lawrence authored on 07/12/2015 03:40:40
December 5, 2015
View cb7ab58

fix single output case for GMAP

Michael Lawrence authored on 05/12/2015 15:00:00
View 4a648a5

regenerate autotools stuff

Michael Lawrence authored on 05/12/2015 14:42:50
View 676579c

re-add maintainer mode support to gstruct

Michael Lawrence authored on 05/12/2015 14:39:13
View ff0b3d9

disable maintainer mode for gsnap

Michael Lawrence authored on 05/12/2015 14:20:35
View 8db42dc

So let's try to support gmapR again on Mac. See:

Herve Pages authored on 05/12/2015 00:34:38
December 3, 2015
View f053c5f

general cleanup and fixes, doc updates

Michael Lawrence authored on 03/12/2015 21:11:09
November 24, 2015
View 5659f09

add raw total count statistic to tallies (everything else now qual filtered)

Michael Lawrence authored on 24/11/2015 22:19:59