October 17, 2016
View28abe94

bump x.y.z versions to odd 'y' after creation of 3_4 branch

Herve Pages authored on 17/10/2016 19:10:43
Viewe945492

bump x.y.z versions to even 'y' prior to creation of 3_4 branch

Herve Pages authored on 17/10/2016 18:45:06
May 3, 2016
Viewaba57c5

bump version after creating 3.3 branch

Dan Tenenbaum authored on 03/05/2016 21:30:44
View3748356

Bump versions prior to creation of 3.3 branch

Dan Tenenbaum authored on 03/05/2016 21:20:18
April 5, 2016
View8b7fd7a

adjustments in response to the vals -> filter renaming in GenomicFeatures

Herve Pages authored on 05/04/2016 22:55:27
March 12, 2016
Viewc3d54b8

move Rsamtools to Depends to avoid masking of bamPaths()

Michael Lawrence authored on 12/03/2016 19:23:55
February 1, 2016
View12074fe

stream past XS counts for indels (even when XS counting is disabled)

Michael Lawrence authored on 01/02/2016 20:11:05
January 29, 2016
Viewd92a799

elementLengths was renamed -> elementNROWS in S4Vectors (new name reflects TRUE semantic, old name will be deprecated soon)

Herve Pages authored on 29/01/2016 01:22:03
December 7, 2015
Viewd36ac68

make seqinfo setting robust to missing seqlevels

Michael Lawrence authored on 07/12/2015 03:40:40
December 5, 2015
Viewcb7ab58

fix single output case for GMAP

Michael Lawrence authored on 05/12/2015 15:00:00
December 3, 2015
Viewf053c5f

general cleanup and fixes, doc updates

Michael Lawrence authored on 03/12/2015 21:11:09
November 24, 2015
View5659f09

add raw total count statistic to tallies (everything else now qual filtered)

Michael Lawrence authored on 24/11/2015 22:19:59
November 23, 2015
Viewead94b3

add ability to call GMAP

Michael Lawrence authored on 23/11/2015 23:25:34
November 19, 2015
View2332d26

add untested support for FaFile=>GmapGenome

Michael Lawrence authored on 19/11/2015 18:51:30
November 13, 2015
View685d60e

work towards supporting new bam_tally; drops quality info (now cutoff based), adds xs/nm/del and codon-level counts

Michael Lawrence authored on 13/11/2015 21:50:11