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View 12074fe
stream past XS counts for indels (even when XS counting is disabled)Michael Lawrence authored on 01/02/2016 20:11:05 |
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View d92a799
elementLengths was renamed -> elementNROWS in S4Vectors (new name reflects TRUE semantic, old name will be deprecated soon)Herve Pages authored on 29/01/2016 01:22:03 |
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View d36ac68
make seqinfo setting robust to missing seqlevelsMichael Lawrence authored on 07/12/2015 03:40:40 |
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View cb7ab58
fix single output case for GMAPMichael Lawrence authored on 05/12/2015 15:00:00 |
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View f053c5f
general cleanup and fixes, doc updatesMichael Lawrence authored on 03/12/2015 21:11:09 |
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View 5659f09
add raw total count statistic to tallies (everything else now qual filtered)Michael Lawrence authored on 24/11/2015 22:19:59 |
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View ead94b3
add ability to call GMAPMichael Lawrence authored on 23/11/2015 23:25:34 |
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View 2332d26
add untested support for FaFile=>GmapGenomeMichael Lawrence authored on 19/11/2015 18:51:30 |
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View 685d60e
work towards supporting new bam_tally; drops quality info (now cutoff based), adds xs/nm/del and codon-level countsMichael Lawrence authored on 13/11/2015 21:50:11 |
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View 8418591
resurrect improvements that we reverted before the April release, expect breakage for a whileMichael Lawrence authored on 28/10/2015 18:51:00 |
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View 1f42582
Bumped version number of all packages after creation of 3.2 branch.Dan Tenenbaum authored on 13/10/2015 19:59:53 |
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View e4a80ba
Bumped versions of all packages prior to creating 3.2 branch.Dan Tenenbaum authored on 13/10/2015 19:36:05 |
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View 093e455
labeledLine() was moved from BiocGenerics to S4VectorsHerve Pages authored on 07/08/2015 23:37:20 |
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View 5be0f7d
Bump versions in trunk after creation of 3.1 branch.Dan Tenenbaum authored on 16/04/2015 20:02:44 |
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View f777bf1
Bump versions prior to creating 3.1 branch.Dan Tenenbaum authored on 16/04/2015 19:42:01 |