Bioconductor Code: Browse

September 10, 2013

	View 119984f actually check in the gmap-mode fix Michael Lawrence authored on 10/09/2013 03:42:15

September 9, 2013

	View 3dd2c1f fix default (NULL) for gmap-mode argument to gsnap Michael Lawrence authored on 09/09/2013 21:59:47

July 14, 2013

	View 2839838 Support terminal_threshold parameter, and use different defaults for DNA vs. RNA. This means a big improvement in alignment quality for DNA. Michael Lawrence authored on 14/07/2013 00:37:00

November 9, 2012

	View c64187e Check that genome argument is provided in GsnapParam. No way to get a safe default for this one. Michael Lawrence authored on 09/11/2012 12:54:49

September 7, 2012

	View e2b4bdb Match up GsnapParams@splicing with new use_splicing gsnap parameter Michael Lawrence authored on 07/09/2012 17:37:14

September 6, 2012

	View a347f0e Fix novelsplicing coercion so that it specifies the 0/1 flag (Greg's second issue). Michael Lawrence authored on 06/09/2012 23:15:38
	View 9facdd9 Rewrite the GsnapParam constructor to coerce its arguments to the slot types. Michael Lawrence authored on 06/09/2012 12:01:42

August 22, 2012

	View e8f9c3a fixed bug in handling 'errors' slot of GsnapParams objects Cory Barr authored on 22/08/2012 22:25:34

August 17, 2012

	View fb3917e novel_splicing GSNAP param should default to FALSE (not 0) in GsnapParams() Michael Lawrence authored on 17/08/2012 20:18:15

August 2, 2012

	View b22faf0 renaming gmapR2 to gmapR: it lives again Michael Lawrence authored on 02/08/2012 22:24:24