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View0771cfd
be more flexible when getting genome nameMichael Lawrence authored on 14/12/2016 18:20:28 |
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View2332d26
add untested support for FaFile=>GmapGenomeMichael Lawrence authored on 19/11/2015 18:51:30 |
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View53f6387
getSeq,GmapGenome now checks that seqinfo(x) and seqinfo(which) are compatibleMichael Lawrence authored on 12/02/2015 21:44:32 |
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View555225f
allow genomes to be built from any sequence file supported by rtracklayerMichael Lawrence authored on 11/10/2014 18:17:31 |
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Viewc78be69
add codon tally support. No vbump yetGabriel Becker authored on 11/08/2014 23:42:48 |
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Viewc0cce6c
follow renaming of TranscriptDb class -> TxDbHerve Pages authored on 28/07/2014 23:15:59 |
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View6bf0a27
suppressWarnings on the read.table in Seqinfo,GmapGenome; complained about colClasses being too long (for older indexes) even when fill=TRUE.Michael Lawrence authored on 20/09/2013 02:03:57 |
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Viewe0faa99
support circular flag in seqinfo,GmapGenomeMichael Lawrence authored on 16/09/2013 23:22:09 |
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Viewd157a85
check if GmapGenome exists before extracting SeqinfoMichael Lawrence authored on 23/08/2013 14:16:30 |
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Viewf18863b
add showAsCell,GmapGenomeMichael Lawrence authored on 15/07/2013 23:42:19 |
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View66e08db
GmapGenome now accepts a direct path to the genome as its first argumentMichael Lawrence authored on 14/07/2013 00:32:56 |
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Viewb19add7
Make sure that the genome index exists before attempting to retrieve sequence.Michael Lawrence authored on 03/04/2013 18:46:36 |
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View609d2fc
fix naming in GmapGenome->DNAStringSet coercionMichael Lawrence authored on 02/04/2013 22:42:00 |
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View2f697ca
Add GmapGenome->DNAStringSet coercion, exports the whole genome sequence. This means export(x, "genome.fasta") should work.Michael Lawrence authored on 27/03/2013 19:11:09 |
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View8edb187
Make seqinfo(x) the default for 'which' in getSeq,GmapGenomeMichael Lawrence authored on 27/03/2013 18:47:53 |