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View f58d4e9
update gstruct/bamtallyMichael Lawrence authored on 25/03/2015 20:25:05 |
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View 796d80e
delete some unneeded? gstruct src filesMichael Lawrence authored on 11/10/2014 20:34:23 |
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View 52563ef
incorporate Tom's bugfix to bamtally when there are no reads at a position. Fixes segfault in R CMD check VariantToolsGabriel Becker authored on 26/08/2014 20:33:39 |
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View cfb01d1
some fiddling, disable maintainer mode, vbumpGabriel Becker authored on 14/08/2014 20:39:03 |
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View 6cc263e
seems to work now. Something weird going on, needs -O0 when building gstructGabriel Becker authored on 14/08/2014 19:13:43 |
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View b0aa06a
fix checkin of codontally codeGabriel Becker authored on 13/08/2014 21:49:41 |
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View c78be69
add codon tally support. No vbump yetGabriel Becker authored on 11/08/2014 23:42:48 |
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View d71517d
once again, disable maintainer mode for gstructMichael Lawrence authored on 03/07/2014 23:40:24 |
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View 52b3ca6
update gstruct (hopefully fix build)Michael Lawrence authored on 06/06/2014 22:10:15 |
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View 2a4fd1e
update ignoresMichael Lawrence authored on 04/06/2014 23:34:39 |
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View f5e63d3
update to new bam_tally with support for XS counting, which we now support via BamTallyParam@count_xs.Michael Lawrence authored on 13/05/2014 02:04:05 |
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View 9f0e3a7
bam_tally has reworked memory management to avoid memory "leaks" that seem to happen on our clusterMichael Lawrence authored on 05/05/2014 21:02:45 |
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View 144f6bb
update bam_tally, mostly to fix memory leaks but we are also moving towards a decent indel realignerMichael Lawrence authored on 30/04/2014 17:04:17 |
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View 1beff33
fix disable-maintainer-modeMichael Lawrence authored on 02/04/2014 22:35:46 |
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View 17db5e7
update GSTRUCT (bam_tally); add include_soft_clip parameter for counting over soft clips of a given max length (more accurate allele frequency)Michael Lawrence authored on 02/04/2014 22:03:40 |