March 25, 2015
View f58d4e9

update gstruct/bamtally

Michael Lawrence authored on 25/03/2015 20:25:05
October 11, 2014
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delete some unneeded? gstruct src files

Michael Lawrence authored on 11/10/2014 20:34:23
August 26, 2014
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incorporate Tom's bugfix to bamtally when there are no reads at a position. Fixes segfault in R CMD check VariantTools

Gabriel Becker authored on 26/08/2014 20:33:39
August 14, 2014
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some fiddling, disable maintainer mode, vbump

Gabriel Becker authored on 14/08/2014 20:39:03
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seems to work now. Something weird going on, needs -O0 when building gstruct

Gabriel Becker authored on 14/08/2014 19:13:43
August 13, 2014
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fix checkin of codontally code

Gabriel Becker authored on 13/08/2014 21:49:41
August 11, 2014
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add codon tally support. No vbump yet

Gabriel Becker authored on 11/08/2014 23:42:48
July 3, 2014
View d71517d

once again, disable maintainer mode for gstruct

Michael Lawrence authored on 03/07/2014 23:40:24
June 6, 2014
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update gstruct (hopefully fix build)

Michael Lawrence authored on 06/06/2014 22:10:15
June 4, 2014
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update ignores

Michael Lawrence authored on 04/06/2014 23:34:39
May 13, 2014
View f5e63d3

update to new bam_tally with support for XS counting, which we now support via BamTallyParam@count_xs.

Michael Lawrence authored on 13/05/2014 02:04:05
May 5, 2014
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bam_tally has reworked memory management to avoid memory "leaks" that seem to happen on our cluster

Michael Lawrence authored on 05/05/2014 21:02:45
April 30, 2014
View 144f6bb

update bam_tally, mostly to fix memory leaks but we are also moving towards a decent indel realigner

Michael Lawrence authored on 30/04/2014 17:04:17
April 2, 2014
View 1beff33

fix disable-maintainer-mode

Michael Lawrence authored on 02/04/2014 22:35:46
View 17db5e7

update GSTRUCT (bam_tally); add include_soft_clip parameter for counting over soft clips of a given max length (more accurate allele frequency)

Michael Lawrence authored on 02/04/2014 22:03:40