git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/gmapR@71082 bc3139a8-67e5-0310-9ffc-ced21a209358
Michael Lawrence authored on 09/11/2012 12:54:49
| ... | ... |
@@ -154,6 +154,8 @@ GsnapParam <- function(genome, unique_only = FALSE, |
| 154 | 154 |
split_output = !unique_only, |
| 155 | 155 |
novelsplicing = FALSE, splicing = NULL, |
| 156 | 156 |
nthreads = 1L, part = NULL, batch = "2", ...) {
|
| 157 |
+ if (missing(genome)) |
|
| 158 |
+ stop("The 'genome' must be specified (should be coercible to GmapGenome)")
|
|
| 157 | 159 |
args <- formals(sys.function()) |
| 158 | 160 |
params <- mget(names(args), environment()) |
| 159 | 161 |
params$unique_only <- NULL |