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Makefile cleanup

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/gmapR@110045 bc3139a8-67e5-0310-9ffc-ced21a209358

Michael Lawrence authored on 28/10/2015 20:53:26
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@@ -45,13 +45,13 @@ $(SUBDIRS): %: %/Makefile
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 gstruct/Makefile: gstruct/configure ${R_SRC_DIR}/samtools 
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 	cd $(dir $@); \
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+        CFLAGS="-g -O3" \
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 	./configure --enable-static --disable-shared \
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 	            --prefix=${PREFIX} --includedir=${GSTRUCT_INCLUDE_DIR} \
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 	            --libdir=${PREFIX}/${LIBnn} \
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 	            --with-samtools-lib=${R_SRC_DIR}/samtools \
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                     --disable-binaries  \
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-		    CFLAGS="-g -O3"
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-#                    \ # \ # \ # \ # --disable-maintainer-mode \;;;;
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+                    --disable-maintainer-mode
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 ## does not appear to be a true dependency yet
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 ##	            --with-gmap=${PREFIX}/bin
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