1. gmapR
  2. Commit a347f0e48f3c95fdb5c3c7fc1b8bc75760d87b83
Browse code

Fix novelsplicing coercion so that it specifies the 0/1 flag (Greg's second issue).

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/gmapR@69161 bc3139a8-67e5-0310-9ffc-ced21a209358

Michael Lawrence authored on 06/09/2012 23:15:38
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R/GsnapParam-class.R
History View file @ a347f0e
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@@ -189,6 +189,7 @@ setAs("GsnapParam", "list", function(from) {
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   }
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   to$snpsdir <- path(directory(to$snps))
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   to$snps <- NULL
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+  to$novelsplicing <- as.integer(to$novelsplicing)
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   extras <- to$extra
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   to <- c(to, extras)