git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/gmapR@95424 bc3139a8-67e5-0310-9ffc-ced21a209358
Michael Lawrence authored on 13/10/2014 20:08:07
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+CHANGES IN VERSION 1.8.0 |
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+----------------------- |
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+ |
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+NEW FEATURES |
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+ |
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+ o GmapGenomes can be built from any file supported by rtracklayer |
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+ (so 2bit now works, as well as fasta). |
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+ |
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+ o Tally BAM files by codon given a set of transcript |
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+ structures. This happens at the read level, i.e., a codon is |
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+ observed within an individual read. |
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+ |
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+ o Tally BAM files strand by XS tag (inferred strand of |
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+ transcription, instead of strand of alignment). |
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+ |
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CHANGES IN VERSION 1.6.0 |
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----------------------- |
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