git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/gmapR@101190 bc3139a8-67e5-0310-9ffc-ced21a209358
Michael Lawrence authored on 25/03/2015 23:20:27
| ... | ... |
@@ -13,10 +13,10 @@ import(BiocParallel) |
| 13 | 13 |
importMethodsFrom(GenomeInfoDb, genome) |
| 14 | 14 |
importFrom(utils, packageVersion) |
| 15 | 15 |
importFrom(Biostrings, getSeq, readDNAStringSet, DNAStringSet) |
| 16 |
-importFrom(GenomicRanges, seqinfo) |
|
| 16 |
+importFrom(GenomeInfoDb, seqinfo, seqlengths) |
|
| 17 | 17 |
importMethodsFrom(GenomicRanges, seqnames, strand) |
| 18 | 18 |
importMethodsFrom(Rsamtools, asBam) |
| 19 |
-importClassesFrom(GenomicFeatures, TxDb) #TranscriptDb) |
|
| 19 |
+importClassesFrom(GenomicFeatures, TxDb) |
|
| 20 | 20 |
importFrom(GenomicFeatures, transcripts, exons) |
| 21 | 21 |
importClassesFrom(rtracklayer, RTLFile, FastaFile) |
| 22 | 22 |
importFrom(rtracklayer, "referenceSequence<-", import, export, FastaFile) |