git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/gmapR@80175 bc3139a8-67e5-0310-9ffc-ced21a209358
Michael Lawrence authored on 09/09/2013 21:59:47
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@@ -10,7 +10,7 @@ Description: GSNAP and GMAP are a pair of tools to align short-read |
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to work with GMAP and GSNAP from within R. In addition, it provides |
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methods to tally alignment results on a per-nucleotide basis using |
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the bam_tally tool. |
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-Version: 1.3.5 |
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+Version: 1.3.6 |
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Depends: R (>= 2.15.0), methods, GenomicRanges |
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Imports: IRanges, Rsamtools (>= 1.7.4), rtracklayer (>= 1.17.15), GenomicRanges, |
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GenomicFeatures, Biostrings, VariantAnnotation (>= 1.7.34), tools, |
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@@ -27,7 +27,7 @@ setClass("GsnapParam",
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nofails = "logical", |
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split_output = "logical", |
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terminal_threshold = "integer", |
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- gmap_mode = "character", |
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+ gmap_mode = "characterORNULL", |
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extra = "list")) |
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