git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/gmapR@86548 bc3139a8-67e5-0310-9ffc-ced21a209358
... | ... |
@@ -113,7 +113,7 @@ read_cycle_counts(unsigned char **bytes, int row, TallyParam param, |
113 | 113 |
double *mdfne, int **cycle_bins) |
114 | 114 |
{ |
115 | 115 |
int n_cycle_breaks = param.n_cycle_bins + 1; |
116 |
- int count_sum = 0, weighted_sum = 0, weighted_sum_sq = 0; |
|
116 |
+ int count_sum = 0; |
|
117 | 117 |
int midpoint = param.read_length / 2.0 + 0.5; |
118 | 118 |
|
119 | 119 |
if (param.mdfne_buf != NULL) { |
... | ... |
@@ -129,8 +129,6 @@ read_cycle_counts(unsigned char **bytes, int row, TallyParam param, |
129 | 129 |
param.mdfne_buf[midpoint-abs(cycle-midpoint)-1] = count; |
130 | 130 |
} |
131 | 131 |
count_sum += count; |
132 |
- weighted_sum += cycle * count; |
|
133 |
- weighted_sum_sq += cycle * cycle * count; |
|
134 | 132 |
if (param.cycle_breaks != NULL) { |
135 | 133 |
while(n_cycle_breaks > bin && |
136 | 134 |
cycle > param.cycle_breaks[bin]) |