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remove some unnnecessary code from tally summarization

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/gmapR@86548 bc3139a8-67e5-0310-9ffc-ced21a209358

Michael Lawrence authored on 18/02/2014 21:37:13
Showing 1 changed files

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@@ -113,7 +113,7 @@ read_cycle_counts(unsigned char **bytes, int row, TallyParam param,
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                   double *mdfne, int **cycle_bins)
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 {
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   int n_cycle_breaks = param.n_cycle_bins + 1;
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-  int count_sum = 0, weighted_sum = 0, weighted_sum_sq = 0;
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+  int count_sum = 0;
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   int midpoint = param.read_length / 2.0 + 0.5;
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   if (param.mdfne_buf != NULL) {
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@@ -129,8 +129,6 @@ read_cycle_counts(unsigned char **bytes, int row, TallyParam param,
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       param.mdfne_buf[midpoint-abs(cycle-midpoint)-1] = count;
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     }
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     count_sum += count;
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-    weighted_sum += cycle * count;
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-    weighted_sum_sq += cycle * cycle * count;
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     if (param.cycle_breaks != NULL) {
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       while(n_cycle_breaks > bin &&
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             cycle > param.cycle_breaks[bin])