git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/gmapR@69160 bc3139a8-67e5-0310-9ffc-ced21a209358
Michael Lawrence authored on 06/09/2012 23:15:14
| ... | ... |
@@ -104,6 +104,7 @@ setMethod("gsnap", c("character", "characterORNULL", "GsnapParam"),
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| 104 | 104 |
batch <- match.arg(batch) |
| 105 | 105 |
mode <- match.arg(mode) |
| 106 | 106 |
quality_protocol <- match.arg(quality_protocol) |
| 107 |
+ filter_chastity <- match.arg(filter_chastity) |
|
| 107 | 108 |
|
| 108 | 109 |
### TODO: if input_a is NULL, or split_output and .redirect are NULL: |
| 109 | 110 |
### return a pipe() |