git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/gmapR@75584 bc3139a8-67e5-0310-9ffc-ced21a209358
Herve Pages authored on 11/04/2013 16:40:41
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@@ -71,7 +71,7 @@ test_GmapGenome_spliceSites_replacement <- function() {
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| 71 | 71 |
rngTP53 <- getTP53Range() |
| 72 | 72 |
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exonsByTx <- exonsBy(txdb, by="tx") |
| 74 |
- exonsInRegion <- exonsByTx[exonsByTx %in% rngTP53] |
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+ exonsInRegion <- exonsByTx[exonsByTx %over% rngTP53] |
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| 75 | 75 |
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| 76 | 76 |
##shift coords of retrieved exons so the ranges match the |
| 77 | 77 |
##region of the genome used for this example |