@@ -9,7 +9,7 @@ Description: GSNAP and GMAP are a pair of tools to align short-read

         methods to work with GMAP and GSNAP from within R. In addition,

         it provides methods to tally alignment results on a

         per-nucleotide basis using the bam_tally tool.

-Version: 1.11.0

+Version: 1.11.1

 Depends: R (>= 2.15.0), methods, GenomeInfoDb (>= 1.1.3),

         GenomicRanges (>= 1.17.12)

 Imports: S4Vectors, IRanges, Rsamtools (>= 1.17.8), rtracklayer (>= 1.25.5),

@@ -155,7 +155,7 @@ setMethod("as.list", "BamTallyParam", function(x) as(x, "list"))

 ###

 showSlot <- function(name, value, ...) {

-  BiocGenerics:::labeledLine(name, showAsCell(value), ...)

+  S4Vectors:::labeledLine(name, showAsCell(value), ...)

 }

 showSlots <- function(object, exclude = character(), ...) {