Package: gmapR
Type: Package
Title: Provides convenience methods to work with GMAP and GSNAP from
    within R
Maintainer: <barr.cory@gene.com>
Author: Cory Barr, Michael Lawrence
Description: GSNAP and GMAP are a pair of tools to align short-read
    data written by Tom Wu.  This package provides convenience methods
    to work with GMAP and GSNAP from within R
Version: 0.12.0
Depends: R (>= 2.14.0), tools, rtracklayer, IRanges
Imports: Rsamtools
Suggests: RUnit
License: Artistic-2.0
Collate: 'atoiindex.R' 'buildGmapDb.R'
    'buildGmapDbSNPIndex.R'
    'buildGmapIITFromFasta.R' 'buildGmapIndex.R'
    'buildGmapSpliceSites.R' 'buildGsnapSNPIIT.R'
    'buildRefseqSpliceSites.R' 'consolidateBAMFiles.R'
    'consolidateGmapFiles.R' 'consolidateGsnapFiles.R'
    'consolidateSAMFiles.R' 'exonsToGmapSpliceSites.R'
    'getGsnapFileCounts.R' 'globals.R' 'gsnap.R' 'installGmap.R'
    'parallelized_gsnap.R' 'test_gmapR_package.R' 'GsnapOutput-class.R'