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	  else \
	    test -f "$(distdir)/$$file" \
	    || cp -p $$d/$$file "$(distdir)/$$file" \
	    || exit 1; \
	  fi; \
	done
check-am: all-am
check: check-am
all-am: Makefile $(SCRIPTS)
installdirs:
	for dir in "$(DESTDIR)$(bindir)"; do \
	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
	done
install: install-am
install-exec: install-exec-am
install-data: install-data-am
uninstall: uninstall-am

install-am: all-am
	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am

installcheck: installcheck-am
install-strip:
	if test -z '$(STRIP)'; then \
	  $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
	    install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
	      install; \
	else \
	  $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
	    install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
	    "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \
	fi
mostlyclean-generic:

clean-generic:
	-test -z "$(CLEANFILES)" || rm -f $(CLEANFILES)

distclean-generic:
	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
	-test . = "$(srcdir)" || test -z "$(CONFIG_CLEAN_VPATH_FILES)" || rm -f $(CONFIG_CLEAN_VPATH_FILES)

maintainer-clean-generic:
	@echo "This command is intended for maintainers to use"
	@echo "it deletes files that may require special tools to rebuild."
clean: clean-am

clean-am: clean-generic clean-libtool mostlyclean-am

distclean: distclean-am
	-rm -f Makefile
distclean-am: clean-am distclean-generic

dvi: dvi-am

dvi-am:

html: html-am

html-am:

info: info-am

info-am:

install-data-am:

install-dvi: install-dvi-am

install-dvi-am:

install-exec-am: install-binSCRIPTS

install-html: install-html-am

install-html-am:

install-info: install-info-am

install-info-am:

install-man:

install-pdf: install-pdf-am

install-pdf-am:

install-ps: install-ps-am

install-ps-am:

installcheck-am:

maintainer-clean: maintainer-clean-am
	-rm -f Makefile
maintainer-clean-am: distclean-am maintainer-clean-generic

mostlyclean: mostlyclean-am

mostlyclean-am: mostlyclean-generic mostlyclean-libtool

pdf: pdf-am

pdf-am:

ps: ps-am

ps-am:

uninstall-am: uninstall-binSCRIPTS

.MAKE: install-am install-strip

.PHONY: all all-am check check-am clean clean-generic clean-libtool \
	cscopelist-am ctags-am distclean distclean-generic \
	distclean-libtool distdir dvi dvi-am html html-am info info-am \
	install install-am install-binSCRIPTS install-data \
	install-data-am install-dvi install-dvi-am install-exec \
	install-exec-am install-html install-html-am install-info \
	install-info-am install-man install-pdf install-pdf-am \
	install-ps install-ps-am install-strip installcheck \
	installcheck-am installdirs maintainer-clean \
	maintainer-clean-generic mostlyclean mostlyclean-generic \
	mostlyclean-libtool pdf pdf-am ps ps-am tags-am uninstall \
	uninstall-am uninstall-binSCRIPTS


gmap_compress: gmap_compress.pl
	cp gmap_compress.pl gmap_compress
	chmod +x gmap_compress

gmap_uncompress: gmap_uncompress.pl
	cp gmap_uncompress.pl gmap_uncompress
	chmod +x gmap_uncompress

gmap_process: gmap_process.pl
	cp gmap_process.pl gmap_process
	chmod +x gmap_process

gmap_setup: gmap_setup.pl
	cp gmap_setup.pl gmap_setup
	chmod +x gmap_setup

gmap_build: gmap_build.pl
	cp gmap_build.pl gmap_build
	chmod +x gmap_build

gmap_reassemble: gmap_reassemble.pl
	cp gmap_reassemble.pl gmap_reassemble
	chmod +x gmap_reassemble

md_coords: md_coords.pl
	cp md_coords.pl md_coords
	chmod +x md_coords

fa_coords: fa_coords.pl
	cp fa_coords.pl fa_coords
	chmod +x fa_coords

psl_splicesites: psl_splicesites.pl
	cp psl_splicesites.pl psl_splicesites
	chmod +x psl_splicesites

psl_genes: psl_genes.pl
	cp psl_genes.pl psl_genes
	chmod +x psl_genes

psl_introns: psl_introns.pl
	cp psl_introns.pl psl_introns
	chmod +x psl_introns

psl_splices: psl_splices.pl
	cp psl_splices.pl psl_splices
	chmod +x psl_splices

gtf_splicesites: gtf_splicesites.pl
	cp gtf_splicesites.pl gtf_splicesites
	chmod +x gtf_splicesites

gtf_introns: gtf_introns.pl
	cp gtf_introns.pl gtf_introns
	chmod +x gtf_introns

gtf_genes: gtf_genes.pl
	cp gtf_genes.pl gtf_genes
	chmod +x gtf_genes

gff3_splicesites: gff3_splicesites.pl
	cp gff3_splicesites.pl gff3_splicesites
	chmod +x gff3_splicesites

gff3_introns: gff3_introns.pl
	cp gff3_introns.pl gff3_introns
	chmod +x gff3_introns

gff3_genes: gff3_genes.pl
	cp gff3_genes.pl gff3_genes
	chmod +x gff3_genes

dbsnp_iit: dbsnp_iit.pl
	cp dbsnp_iit.pl dbsnp_iit
	chmod +x dbsnp_iit

gvf_iit: gvf_iit.pl
	cp gvf_iit.pl gvf_iit
	chmod +x gvf_iit

vcf_iit: vcf_iit.pl
	cp vcf_iit.pl vcf_iit
	chmod +x vcf_iit

sam_merge: sam_merge.pl
	cp sam_merge.pl sam_merge
	chmod +x sam_merge

sam_restore: sam_restore.pl
	cp sam_restore.pl sam_restore
	chmod +x sam_restore

# Tell versions [3.59,3.63) of GNU make to not export all variables.
# Otherwise a system limit (for SysV at least) may be exceeded.
.NOEXPORT: