1. glmGamPoi
  2. DESCRIPTION
Browse code

Bump version and update NEWS

const-ae authored on 03/11/2023 23:32:55
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1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 1.15.0
4 
+Version: 1.15.1
5 5 
 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
6 6 
                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
7 7 
              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
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bump x.y.z version to odd y following creation of RELEASE_3_18 branch

J Wokaty authored on 24/10/2023 15:21:01
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1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 1.14.0
4 
+Version: 1.15.0
5 5 
 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
6 6 
                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
7 7 
              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
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bump x.y.z version to even y prior to creation of RELEASE_3_18 branch

J Wokaty authored on 24/10/2023 15:21:01
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1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 1.13.3
4 
+Version: 1.14.0
5 5 
 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
6 6 
                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
7 7 
              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
Browse code

Bump version

const-ae authored on 07/09/2023 08:31:41
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1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 1.13.2
4 
+Version: 1.13.3
5 5 
 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
6 6 
                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
7 7 
              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
Browse code

Bump version and update NEWS

const-ae authored on 03/07/2023 14:56:42
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@@ -1,7 +1,7 @@
1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 1.13.1
4 
+Version: 1.13.2
5 5 
 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
6 6 
                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
7 7 
              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
Browse code

Bump version

const-ae authored on 02/07/2023 16:08:01
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@@ -1,7 +1,7 @@
1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 1.13.0
4 
+Version: 1.13.1
5 5 
 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
6 6 
                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
7 7 
              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
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bump x.y.z version to odd y following creation of RELEASE_3_17 branch

J Wokaty authored on 25/04/2023 15:16:59
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1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 1.12.0
4 
+Version: 1.13.0
5 5 
 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
6 6 
                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
7 7 
              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
Browse code

bump x.y.z version to even y prior to creation of RELEASE_3_17 branch

J Wokaty authored on 25/04/2023 15:16:59
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1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 1.11.8
4 
+Version: 1.12.0
5 5 
 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
6 6 
                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
7 7 
              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
Browse code

Bump version and update NEWS

const-ae authored on 22/03/2023 14:23:35
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1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 1.11.7
4 
+Version: 1.11.8
5 5 
 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
6 6 
                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
7 7 
              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
Browse code

Update NEWS and bump version

const-ae authored on 27/02/2023 18:11:27
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1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 1.11.6
4 
+Version: 1.11.7
5 5 
 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
6 6 
                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
7 7 
              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
Browse code

Update NEWS and bump version

const-ae authored on 27/02/2023 13:15:09
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@@ -1,7 +1,7 @@
1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 1.11.5
4 
+Version: 1.11.6
5 5 
 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
6 6 
                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
7 7 
              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
Browse code

Make pseudobulk's aggregation consistent with dplyr

Use the same underlying package infrastructure (vctrs) to decide when
rows in a data frame are equal. Previously, `split()` silently dropped
NA's...

This fixes #47

const-ae authored on 27/02/2023 13:07:11
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DESCRIPTION
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@@ -30,7 +30,8 @@ Suggests:
30 30 
     TENxPBMCData,
31 31 
     muscData,
32 32 
     scran,
33 
-    Matrix
33 
+    Matrix,
34 
+    dplyr
34 35 
 LinkingTo:
35 36 
     Rcpp,
36 37 
     RcppArmadillo,
... ... 
@@ -49,7 +50,8 @@ Imports:
49 50 
     stats,
50 51 
     utils,
51 52 
     splines,
52 
-    rlang
53 
+    rlang,
54 
+    vctrs
53 55 
 Roxygen: list(markdown = TRUE)
54 56 
 RoxygenNote: 7.2.3
55 57 
 URL: https://github.com/const-ae/glmGamPoi
Browse code

Bump version

const-ae authored on 21/02/2023 15:47:15
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@@ -1,7 +1,7 @@
1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 1.11.4
4 
+Version: 1.11.5
5 5 
 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
6 6 
                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
7 7 
              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
Browse code

Bump version

const-ae authored on 08/02/2023 13:46:00
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@@ -1,7 +1,7 @@
1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 1.11.3
4 
+Version: 1.11.4
5 5 
 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
6 6 
                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
7 7 
              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
Browse code

Bump version

const-ae authored on 31/01/2023 15:39:07
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@@ -1,7 +1,7 @@
1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 1.11.2
4 
+Version: 1.11.3
5 5 
 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
6 6 
                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
7 7 
              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
Browse code

Bump version and update NEWS

const-ae authored on 13/01/2023 11:48:23
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@@ -1,7 +1,7 @@
1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 1.11.1
4 
+Version: 1.11.2
5 5 
 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
6 6 
                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
7 7 
              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
Browse code

Update NEWS and bump version

const-ae authored on 03/01/2023 18:08:16
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DESCRIPTION
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@@ -1,7 +1,7 @@
1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 1.11.0
4 
+Version: 1.11.1
5 5 
 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
6 6 
                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
7 7 
              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
Browse code

Bump roxygen note

const-ae authored on 03/01/2023 15:42:43
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DESCRIPTION
History View file @ 5f3ed7f
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@@ -51,7 +51,7 @@ Imports:
51 51 
     splines,
52 52 
     rlang
53 53 
 Roxygen: list(markdown = TRUE)
54 
-RoxygenNote: 7.1.2
54 
+RoxygenNote: 7.2.3
55 55 
 URL: https://github.com/const-ae/glmGamPoi
56 56 
 BugReports: https://github.com/const-ae/glmGamPoi/issues
57 57 
 biocViews: Regression, RNASeq, Software, SingleCell
Browse code

bump x.y.z version to odd y following creation of RELEASE_3_16 branch

J Wokaty authored on 01/11/2022 15:21:46
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@@ -1,7 +1,7 @@
1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 1.10.0
4 
+Version: 1.11.0
5 5 
 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
6 6 
                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
7 7 
              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
Browse code

bump x.y.z version to even y prior to creation of RELEASE_3_16 branch

J Wokaty authored on 01/11/2022 15:21:46
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DESCRIPTION
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@@ -1,7 +1,7 @@
1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 1.9.2
4 
+Version: 1.10.0
5 5 
 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
6 6 
                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
7 7 
              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
Browse code

Fix warning about missing Matrix import

const-ae authored on 24/10/2022 15:22:38
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DESCRIPTION
History View file @ 903e13e
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@@ -29,7 +29,8 @@ Suggests:
29 29 
     BiocStyle,
30 30 
     TENxPBMCData,
31 31 
     muscData,
32 
-    scran
32 
+    scran,
33 
+    Matrix
33 34 
 LinkingTo:
34 35 
     Rcpp,
35 36 
     RcppArmadillo,
Browse code

Change interface of pseudobulk_sce to use 'rlang' idioms

const-ae authored on 24/10/2022 13:58:53
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DESCRIPTION
History View file @ 58c0114
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@@ -42,11 +42,13 @@ Imports:
42 42 
     DelayedArray,
43 43 
     HDF5Array,
44 44 
     SummarizedExperiment,
45 
+    SingleCellExperiment,
45 46 
     BiocGenerics,
46 47 
     methods,
47 48 
     stats,
48 49 
     utils,
49 
-    splines
50 
+    splines,
51 
+    rlang
50 52 
 Roxygen: list(markdown = TRUE)
51 53 
 RoxygenNote: 7.1.2
52 54 
 URL: https://github.com/const-ae/glmGamPoi
Browse code

Add MatrixGenerics to import

const-ae authored on 30/09/2022 13:27:37
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DESCRIPTION
History View file @ 11617f3
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@@ -38,6 +38,7 @@ Imports:
38 38 
     Rcpp,
39 39 
     DelayedMatrixStats,
40 40 
     matrixStats,
41 
+    MatrixGenerics,
41 42 
     DelayedArray,
42 43 
     HDF5Array,
43 44 
     SummarizedExperiment,
Browse code

Bump version and update NEWS

const-ae authored on 30/09/2022 13:07:04
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DESCRIPTION
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@@ -1,7 +1,7 @@
1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 1.9.1
4 
+Version: 1.9.2
5 5 
 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
6 6 
                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
7 7 
              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
Browse code

Minor code clean-up

const-ae authored on 30/09/2022 13:04:40
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DESCRIPTION
History View file @ 2f78248
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@@ -47,7 +47,7 @@ Imports:
47 47 
     utils,
48 48 
     splines
49 49 
 Roxygen: list(markdown = TRUE)
50 
-RoxygenNote: 7.1.1
50 
+RoxygenNote: 7.1.2
51 51 
 URL: https://github.com/const-ae/glmGamPoi
52 52 
 BugReports: https://github.com/const-ae/glmGamPoi/issues
53 53 
 biocViews: Regression, RNASeq, Software, SingleCell
Browse code

Bump version and update NEWS

const-ae authored on 30/09/2022 13:03:50
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DESCRIPTION
History View file @ e205bca
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@@ -1,7 +1,7 @@
1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 1.9.0
4 
+Version: 1.9.1
5 5 
 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
6 6 
                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
7 7 
              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
Browse code

bump x.y.z version to odd y following creation of RELEASE_3_15 branch

Nitesh Turaga authored on 26/04/2022 16:04:08
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@@ -1,7 +1,7 @@
1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 1.8.0
4 
+Version: 1.9.0
5 5 
 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
6 6 
                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
7 7 
              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
Browse code

bump x.y.z version to even y prior to creation of RELEASE_3_15 branch

Nitesh Turaga authored on 26/04/2022 16:04:08
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@@ -1,7 +1,7 @@
1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 1.7.0
4 
+Version: 1.8.0
5 5 
 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
6 6 
                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
7 7 
              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
Browse code

bump x.y.z version to odd y following creation of RELEASE_3_14 branch

Nitesh Turaga authored on 26/10/2021 16:58:38
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@@ -1,7 +1,7 @@
1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 1.6.0
4 
+Version: 1.7.0
5 5 
 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
6 6 
                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
7 7 
              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
Browse code

bump x.y.z version to even y prior to creation of RELEASE_3_14 branch

Nitesh Turaga authored on 26/10/2021 16:58:38
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@@ -1,7 +1,7 @@
1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 1.5.4
4 
+Version: 1.6.0
5 5 
 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
6 6 
                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
7 7 
              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
Browse code

Bump version

const-ae authored on 27/08/2021 09:05:27
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@@ -1,7 +1,7 @@
1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 1.5.3
4 
+Version: 1.5.4
5 5 
 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
6 6 
                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
7 7 
              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
Browse code

Update NEWS and bump version

const-ae authored on 06/08/2021 08:42:39
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@@ -1,7 +1,7 @@
1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 1.5.2
4 
+Version: 1.5.3
5 5 
 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
6 6 
                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
7 7 
              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
Browse code

Bump version and update NEWS

const-ae authored on 01/07/2021 11:47:23
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DESCRIPTION
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@@ -1,7 +1,7 @@
1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 1.5.1
4 
+Version: 1.5.2
5 5 
 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
6 6 
                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
7 7 
              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
Browse code

Bump version and update news

const-ae authored on 22/06/2021 14:12:19
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DESCRIPTION
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1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 1.5.0
4 
+Version: 1.5.1
5 5 
 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
6 6 
                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
7 7 
              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
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bump x.y.z version to odd y following creation of RELEASE_3_13 branch

Nitesh Turaga authored on 19/05/2021 16:51:11
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1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 1.4.0
4 
+Version: 1.5.0
5 5 
 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
6 6 
                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
7 7 
              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
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bump x.y.z version to even y prior to creation of RELEASE_3_13 branch

Nitesh Turaga authored on 19/05/2021 16:51:11
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1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 1.3.10
4 
+Version: 1.4.0
5 5 
 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
6 6 
                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
7 7 
              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
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Update NEWS and bump version

const-ae authored on 27/04/2021 21:06:54
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1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 1.3.9
4 
+Version: 1.3.10
5 5 
 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
6 6 
                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
7 7 
              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
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Update NEWS and bump version

const-ae authored on 01/04/2021 09:39:23
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1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 1.3.8
4 
+Version: 1.3.9
5 5 
 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
6 6 
                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
7 7 
              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
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Update NEWS and bump version

const-ae authored on 01/04/2021 09:35:04
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1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 1.3.7
4 
+Version: 1.3.8
5 5 
 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
6 6 
                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
7 7 
              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
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Make sure that residuals are pristine and named

const-ae authored on 19/03/2021 14:19:34
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@@ -1,7 +1,7 @@
1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 1.3.6
4 
+Version: 1.3.7
5 5 
 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
6 6 
                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
7 7 
              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
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Bump version

const-ae authored on 08/01/2021 15:54:21
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1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 1.3.5
4 
+Version: 1.3.6
5 5 
 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
6 6 
                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
7 7 
              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
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Fix problems in documentation

const-ae authored on 08/01/2021 15:35:52
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@@ -41,6 +41,7 @@ Imports:
41 41 
     DelayedArray,
42 42 
     HDF5Array,
43 43 
     SummarizedExperiment,
44 
+    BiocGenerics,
44 45 
     methods,
45 46 
     stats,
46 47 
     utils,
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Bump version of RoxygenNote in DESCRIPTION

const-ae authored on 08/01/2021 14:41:37
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@@ -46,7 +46,7 @@ Imports:
46 46 
     utils,
47 47 
     splines
48 48 
 Roxygen: list(markdown = TRUE)
49 
-RoxygenNote: 7.1.0
49 
+RoxygenNote: 7.1.1
50 50 
 URL: https://github.com/const-ae/glmGamPoi
51 51 
 BugReports: https://github.com/const-ae/glmGamPoi/issues
52 52 
 biocViews: Regression, RNASeq, Software, SingleCell
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Bump version and update NEWS

const-ae authored on 28/12/2020 17:46:50
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@@ -1,7 +1,7 @@
1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 1.3.4
4 
+Version: 1.3.5
5 5 
 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
6 6 
                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
7 7 
              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
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Bump version and update NEWS

const-ae authored on 25/11/2020 13:52:03
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History View file @ 89aac9d
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@@ -1,7 +1,7 @@
1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 1.3.3
4 
+Version: 1.3.4
5 5 
 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
6 6 
                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
7 7 
              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
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Bump version and update NEWS

const-ae authored on 17/11/2020 11:44:13
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History View file @ 21dfb1d
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@@ -1,7 +1,7 @@
1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 1.3.2
4 
+Version: 1.3.3
5 5 
 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
6 6 
                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
7 7 
              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
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Update README / vignette

Improve section on differential expression analysis. Use the Kang 2018
dataset provided by muscData

const-ae authored on 16/11/2020 17:38:34
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History View file @ 782bbe6
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@@ -28,6 +28,7 @@ Suggests:
28 28 
     rmarkdown,
29 29 
     BiocStyle,
30 30 
     TENxPBMCData,
31 
+    muscData,
31 32 
     scran
32 33 
 LinkingTo:
33 34 
     Rcpp,
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Update NEWS and bump version

const-ae authored on 16/11/2020 12:20:35
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@@ -1,7 +1,7 @@
1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 1.3.1
4 
+Version: 1.3.2
5 5 
 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
6 6 
                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
7 7 
              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
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Update NEWS and DESCRIPTION

const-ae authored on 09/11/2020 14:47:15
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History View file @ 86f6696
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@@ -1,7 +1,7 @@
1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 1.3.0
4 
+Version: 1.3.1
5 5 
 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
6 6 
                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
7 7 
              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
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bump x.y.z version to odd y following creation of RELEASE_3_12 branch

Nitesh Turaga authored on 27/10/2020 15:55:36
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1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 1.2.0
4 
+Version: 1.3.0
5 5 
 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
6 6 
                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
7 7 
              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
Browse code

bump x.y.z version to even y prior to creation of RELEASE_3_12 branch

Nitesh Turaga authored on 27/10/2020 15:55:36
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1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 1.1.13
4 
+Version: 1.2.0
5 5 
 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
6 6 
                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
7 7 
              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
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Bump version

const-ae authored on 24/08/2020 10:37:02
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1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 1.1.12
4 
+Version: 1.1.13
5 5 
 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
6 6 
                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
7 7 
              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
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Bump version

const-ae authored on 24/08/2020 08:29:28
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1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 1.1.11
4 
+Version: 1.1.12
5 5 
 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
6 6 
                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
7 7 
              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
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Bump version and NEWS

const-ae authored on 14/08/2020 12:31:03
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@@ -1,7 +1,7 @@
1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 1.1.10
4 
+Version: 1.1.11
5 5 
 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
6 6 
                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
7 7 
              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
Browse code

Bump version

const-ae authored on 05/08/2020 11:38:20
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@@ -1,7 +1,7 @@
1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 1.1.9
4 
+Version: 1.1.10
5 5 
 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
6 6 
                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
7 7 
              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
Browse code

Change the default size factor estimation method

* Provide an easy way to call scran::calculateSumFactors()
* Use normed_sum as default
* Add scran to suggested packages

const-ae authored on 05/08/2020 11:31:16
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DESCRIPTION
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@@ -27,7 +27,8 @@ Suggests:
27 27 
     knitr,
28 28 
     rmarkdown,
29 29 
     BiocStyle,
30 
-    TENxPBMCData
30 
+    TENxPBMCData,
31 
+    scran
31 32 
 LinkingTo:
32 33 
     Rcpp,
33 34 
     RcppArmadillo,
Browse code

Bump version and NEWS

const-ae authored on 21/07/2020 11:05:33
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@@ -1,7 +1,7 @@
1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 1.1.8
4 
+Version: 1.1.9
5 5 
 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
6 6 
                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
7 7 
              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
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Bump version

const-ae authored on 14/07/2020 12:23:38
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@@ -1,7 +1,7 @@
1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 1.1.7
4 
+Version: 1.1.8
5 5 
 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
6 6 
                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
7 7 
              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
Browse code

Bump version

const-ae authored on 24/06/2020 07:59:48
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1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 1.1.6
4 
+Version: 1.1.7
5 5 
 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
6 6 
                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
7 7 
              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
Browse code

Update News and bump version

const-ae authored on 18/06/2020 14:28:00
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@@ -1,7 +1,7 @@
1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 1.1.5
4 
+Version: 1.1.6
5 5 
 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
6 6 
                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
7 7 
              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
Browse code

Add matrixStats as explicit dependency

const-ae authored on 09/06/2020 10:48:07
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History View file @ d9d6df2
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@@ -35,6 +35,7 @@ LinkingTo:
35 35 
 Imports:
36 36 
     Rcpp,
37 37 
     DelayedMatrixStats,
38 
+    matrixStats,
38 39 
     DelayedArray,
39 40 
     HDF5Array,
40 41 
     SummarizedExperiment,
Browse code

Bump version

const-ae authored on 09/06/2020 09:53:18
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@@ -1,7 +1,7 @@
1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 1.1.4
4 
+Version: 1.1.5
5 5 
 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
6 6 
                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
7 7 
              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
Browse code

Fix package suggests

const-ae authored on 04/06/2020 14:35:31
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DESCRIPTION
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@@ -17,6 +17,7 @@ Suggests:
17 17 
     zoo,
18 18 
     DESeq2,
19 19 
     edgeR,
20 
+    limma,
20 21 
     beachmat,
21 22 
     MASS,
22 23 
     statmod,
Browse code

Estimate variance prior

const-ae authored on 28/05/2020 06:56:27
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@@ -39,7 +39,8 @@ Imports:
39 39 
     SummarizedExperiment,
40 40 
     methods,
41 41 
     stats,
42 
-    utils
42 
+    utils,
43 
+    splines
43 44 
 Roxygen: list(markdown = TRUE)
44 45 
 RoxygenNote: 7.1.0
45 46 
 URL: https://github.com/const-ae/glmGamPoi
Browse code

Bump version

const-ae authored on 25/05/2020 16:51:56
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@@ -1,7 +1,7 @@
1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 1.1.3
4 
+Version: 1.1.4
5 5 
 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
6 6 
                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
7 7 
              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
Browse code

Bump version

const-ae authored on 24/05/2020 17:40:12
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1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 1.1.2
4 
+Version: 1.1.3
5 5 
 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
6 6 
                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
7 7 
              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
Browse code

Bump version

const-ae authored on 24/05/2020 17:16:58
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1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 1.1.1
4 
+Version: 1.1.2
5 5 
 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
6 6 
                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
7 7 
              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
Browse code

Bump version

const-ae authored on 21/05/2020 13:26:28
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@@ -1,7 +1,7 @@
1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 1.1.0
4 
+Version: 1.1.1
5 5 
 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
6 6 
                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
7 7 
              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
Browse code

Clean up documentation

const-ae authored on 21/05/2020 13:22:20
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@@ -30,10 +30,9 @@ Suggests:
30 30 
 LinkingTo:
31 31 
     Rcpp,
32 32 
     RcppArmadillo,
33 
-    beachmat (>= 2.0.0)
33 
+    beachmat
34 34 
 Imports:
35 35 
     Rcpp,
36 
-    pracma,
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     DelayedMatrixStats,
38 37 
     DelayedArray,
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     HDF5Array,
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@@ -42,7 +41,7 @@ Imports:
42 41 
     stats,
43 42 
     utils
44 43 
 Roxygen: list(markdown = TRUE)
45 
-RoxygenNote: 7.0.2
44 
+RoxygenNote: 7.1.0
46 45 
 URL: https://github.com/const-ae/glmGamPoi
47 46 
 BugReports: https://github.com/const-ae/glmGamPoi/issues
48 47 
 biocViews: Regression, RNASeq, Software, SingleCell
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bump x.y.z version to odd y following creation of RELEASE_3_11 branch

Nitesh Turaga authored on 27/04/2020 19:35:32
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DESCRIPTION
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@@ -1,7 +1,7 @@
1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 1.0.0
4 
+Version: 1.1.0
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 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
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                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
7 7 
              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
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bump x.y.z version to even y prior to creation of RELEASE_3_11 branch

Nitesh Turaga authored on 27/04/2020 19:35:32
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DESCRIPTION
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@@ -1,7 +1,7 @@
1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 0.99.9
4 
+Version: 1.0.0
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 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
6 6 
                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
7 7 
              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
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Bump version

const-ae authored on 18/04/2020 18:40:32
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@@ -1,7 +1,7 @@
1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 0.99.8
4 
+Version: 0.99.9
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 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
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                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
7 7 
              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
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Fix documentation for as.list.glmGamPoi

const-ae authored on 14/04/2020 12:38:02
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DESCRIPTION
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@@ -1,7 +1,7 @@
1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 0.99.7
4 
+Version: 0.99.8
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 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
6 6 
                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
7 7 
              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
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Bump version

const-ae authored on 14/04/2020 12:10:49
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DESCRIPTION
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@@ -1,7 +1,7 @@
1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 0.99.6
4 
+Version: 0.99.7
5 5 
 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
6 6 
                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
7 7 
              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
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Bump version

const-ae authored on 29/03/2020 15:42:48
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DESCRIPTION
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@@ -1,7 +1,7 @@
1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 0.99.5
4 
+Version: 0.99.6
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 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
6 6 
                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
7 7 
              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
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Bump version again

const-ae authored on 29/03/2020 15:26:07
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DESCRIPTION
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@@ -1,7 +1,7 @@
1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 0.99.4
4 
+Version: 0.99.5
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 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
6 6 
                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
7 7 
              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
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Add TENxPBMCData to suggested packages

const-ae authored on 27/03/2020 18:46:26
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DESCRIPTION
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@@ -25,7 +25,8 @@ Suggests:
25 25 
     BiocParallel,
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     knitr,
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     rmarkdown,
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-    BiocStyle
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+    BiocStyle,
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+    TENxPBMCData
29 30 
 LinkingTo:
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     Rcpp,
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     RcppArmadillo,
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Bump version

const-ae authored on 27/03/2020 16:02:01
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@@ -1,7 +1,7 @@
1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 0.99.3
4 
+Version: 0.99.4
5 5 
 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
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                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
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              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
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Remove LazyData from DESCRIPTION

const-ae authored on 27/03/2020 14:50:25
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DESCRIPTION
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@@ -11,7 +11,6 @@ Description: Fit linear models to overdispersed count data.
11 11 
      typically occur in single cell RNA-seq experiments.
12 12 
 License: GPL-3
13 13 
 Encoding: UTF-8
14 
-LazyData: true
15 14 
 SystemRequirements: C++11
16 15 
 Suggests:
17 16 
     testthat (>= 2.1.0),
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Bump version

const-ae authored on 24/03/2020 09:12:58
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@@ -1,7 +1,7 @@
1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 0.99.2
4 
+Version: 0.99.3
5 5 
 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
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                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
7 7 
              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
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Bump version

const-ae authored on 24/03/2020 08:42:31
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@@ -1,7 +1,7 @@
1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 0.99.1
4 
+Version: 0.99.2
5 5 
 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
6 6 
                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
7 7 
              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
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Bump version

const-ae authored on 23/03/2020 21:31:39
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DESCRIPTION
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@@ -1,7 +1,7 @@
1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 0.99.0
4 
+Version: 0.99.1
5 5 
 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
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                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
7 7 
              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
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Fix some problems in documentation

const-ae authored on 23/03/2020 21:31:20
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DESCRIPTION
History View file @ 21f39e4
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@@ -13,7 +13,6 @@ License: GPL-3
13 13 
 Encoding: UTF-8
14 14 
 LazyData: true
15 15 
 SystemRequirements: C++11
16 
-Depends: R (>= 3.6.0)
17 16 
 Suggests:
18 17 
     testthat (>= 2.1.0),
19 18 
     zoo,
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Add SingleCell to biocViews

const-ae authored on 23/03/2020 15:17:40
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DESCRIPTION
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@@ -46,5 +46,5 @@ Roxygen: list(markdown = TRUE)
46 46 
 RoxygenNote: 7.0.2
47 47 
 URL: https://github.com/const-ae/glmGamPoi
48 48 
 BugReports: https://github.com/const-ae/glmGamPoi/issues
49 
-biocViews: Regression, RNASeq, Software
49 
+biocViews: Regression, RNASeq, Software, SingleCell
50 50 
 VignetteBuilder: knitr
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Fix version number

const-ae authored on 23/03/2020 11:27:45
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DESCRIPTION
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@@ -1,7 +1,7 @@
1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3 3 
 Title: Fit a Gamma-Poisson Generalized Linear Model
4 
-Version: 0.0.99
4 
+Version: 0.99.0
5 5 
 Authors@R: c(person("Constantin", "Ahlmann-Eltze", email = "artjom31415@googlemail.com",
6 6 
                     role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3762-068X")),
7 7 
              person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = "ctb"))
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Add stats and utils to DESCRIPTION imports

const-ae authored on 23/03/2020 11:24:48
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DESCRIPTION
History View file @ 397661c
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@@ -39,7 +39,9 @@ Imports:
39 39 
     DelayedArray,
40 40 
     HDF5Array,
41 41 
     SummarizedExperiment,
42 
-    methods
42 
+    methods,
43 
+    stats,
44 
+    utils
43 45 
 Roxygen: list(markdown = TRUE)
44 46 
 RoxygenNote: 7.0.2
45 47 
 URL: https://github.com/const-ae/glmGamPoi
Browse code

Add biocViews terms

const-ae authored on 23/03/2020 11:14:01
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DESCRIPTION
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@@ -44,5 +44,5 @@ Roxygen: list(markdown = TRUE)
44 44 
 RoxygenNote: 7.0.2
45 45 
 URL: https://github.com/const-ae/glmGamPoi
46 46 
 BugReports: https://github.com/const-ae/glmGamPoi/issues
47 
-biocViews:
47 
+biocViews: Regression, RNASeq, Software
48 48 
 VignetteBuilder: knitr
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Set version to 0.0.99

const-ae authored on 23/03/2020 11:09:56
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DESCRIPTION
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@@ -1,7 +1,7 @@
1 1 
 Package: glmGamPoi
2 2 
 Type: Package
3