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  • 431ec37b (origin/RELEASE_3_16, RELEASE_3_16) import cli by Guangchuang Yu <guangchuangyu@gmail.com> 2022-11-10 11:31:25 +0800;
  • 831547ce compatible with ggplot2 3.4.0 by Guangchuang Yu <guangchuangyu@gmail.com> 2022-11-07 15:14:22 +0800;
  • 5fdc91ec (HEAD -> master, origin/master, origin/HEAD) bump version by Guangchuang Yu <guangchuangyu@gmail.com> 2022-11-06 22:52:54 +0800;
  • 51bfc423 Merge pull request <a href="#543">#543</a> from xiangpin/master by Guangchuang Yu <guangchuangyu@gmail.com> 2022-11-06 22:51:54 +0800;
  • d5b302e2 geom_hilight options by Guangchuang Yu <guangchuangyu@gmail.com> 2022-11-06 15:48:45 +0800;
  • e82a3f93 Merge branch 'master' into dev_for_new_ggplot2 by xiangpin <xshuangbin@163.com> 2022-11-06 11:25:04 +0800;
  • 77e38437 update by Guangchuang Yu <guangchuangyu@gmail.com> 2022-11-02 11:11:57 +0800;
  • 403d9f6b update docs by Guangchuang Yu <guangchuangyu@gmail.com> 2022-11-02 10:53:13 +0800;
  • 60c639c2 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:11:01 -0400;
  • 9e6481c5 bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:11:01 -0400;
  • 10df0529 update bioc version by Guangchuang Yu <guangchuangyu@gmail.com> 2022-11-01 14:25:03 +0800;
  • b1b4c2ad update by Guangchuang Yu <guangchuangyu@gmail.com> 2022-09-29 12:02:05 +0800;
  • f53863b5 update docs; by Guangchuang Yu <guangchuangyu@gmail.com> 2022-09-29 11:42:03 +0800;
  • 8e48d3e2 (origin/RELEASE_3_15, RELEASE_3_15) update citation by Guangchuang Yu <guangchuangyu@gmail.com> 2022-09-27 10:01:08 +0800;
  • 8fa53c15 correct citation by Guangchuang Yu <guangchuangyu@gmail.com> 2022-09-27 10:00:01 +0800;
  • 9792814d update by Guangchuang Yu <guangchuangyu@gmail.com> 2022-09-26 15:48:56 +0800;
  • 64ba6293 update by Guangchuang Yu <guangchuangyu@gmail.com> 2022-09-26 15:42:10 +0800;
  • 3b84b21f new citation by Guangchuang Yu <guangchuangyu@gmail.com> 2022-09-26 15:41:17 +0800;
  • 4aab83f3 new citation by Guangchuang Yu <guangchuangyu@gmail.com> 2022-09-26 15:40:16 +0800;
  • bf457df7 move scale-color-subtree to ggtreeDendro by Guangchuang Yu <guangchuangyu@gmail.com> 2022-09-23 10:52:18 +0800;
  • 6fbaa761 update citation by Guangchuang Yu <guangchuangyu@gmail.com> 2022-09-15 11:05:22 +0800;
  • 8c778e2c Merge branch 'master' into dev_for_new_ggplot2 by xiangpin <xshuangbin@163.com> 2022-08-23 20:39:47 +0800;
  • 40fd4780 bump version by Guangchuang Yu <guangchuangyu@gmail.com> 2022-08-19 16:36:03 +0800;
  • 6651b9a9 Merge pull request <a href="#527">#527</a> from xiangpin/master by Guangchuang Yu <guangchuangyu@gmail.com> 2022-08-19 15:37:44 +0800;
  • 7d8d25ed Merge remote-tracking branch 'upstream/master' by xiangpin <xshuangbin@163.com> 2022-08-19 15:06:38 +0800;
  • 943666a0 unify the fortify for pvclust and hclust class by xiangpin <xshuangbin@163.com> 2022-08-19 15:06:16 +0800;
  • 9661cf6f Merge pull request <a href="#526">#526</a> from xiangpin/master by Guangchuang Yu <guangchuangyu@gmail.com> 2022-08-17 17:20:12 +0800;
  • b516bc45 Merge remote-tracking branch 'upstream/master' by xiangpin <xshuangbin@163.com> 2022-08-15 20:40:35 +0800;
  • 845fc695 update fortify for pvclust class by xiangpin <xshuangbin@163.com> 2022-08-15 20:35:56 +0800;
  • 99e15b93 update docs by Guangchuang Yu <guangchuangyu@gmail.com> 2022-08-15 18:06:17 +0800;
  • c542c7c3 Merge pull request <a href="#525">#525</a> from xiangpin/master by Guangchuang Yu <guangchuangyu@gmail.com> 2022-08-15 17:47:48 +0800;
  • 8ed69d0d update fortify for pvclust by xiangpin <xshuangbin@163.com> 2022-08-14 16:23:47 +0800;
  • bd2e643c url by Guangchuang Yu <guangchuangyu@gmail.com> 2022-08-13 17:59:31 +0800;
  • d51af68f update citation by Guangchuang Yu <guangchuangyu@gmail.com> 2022-08-13 17:50:20 +0800;
  • e6a56b47 update citation by Guangchuang Yu <guangchuangyu@gmail.com> 2022-08-13 17:45:00 +0800;
  • 96261562 Merge pull request <a href="#523">#523</a> from xiangpin/master by Guangchuang Yu <guangchuangyu@gmail.com> 2022-08-12 23:49:48 +0800;
  • 760357e5 Merge remote-tracking branch 'upstream/master' by xiangpin <xshuangbin@163.com> 2022-08-12 20:54:09 +0800;
  • 130504b3 roundrect and ellipse layout incorporate with coord_flip by xiangpin <xshuangbin@163.com> 2022-08-12 20:08:10 +0800;
  • 8e68437c update geom_tiplab when label mapping as as_ylab by xiangpin <xshuangbin@163.com> 2022-08-11 18:56:00 +0800;
  • ab464358 linkage support by Guangchuang Yu <guangchuangyu@gmail.com> 2022-08-11 17:03:41 +0800;
  • 5a345f98 Merge pull request <a href="#520">#520</a> from xiangpin/master by Guangchuang Yu <guangchuangyu@gmail.com> 2022-08-03 23:20:37 +0800;
  • 1261cd1a Merge remote-tracking branch 'upstream/master' by xiangpin <xshuangbin@163.com> 2022-08-02 14:24:53 +0800;
  • ee3dad7d fix a bug in geom_hilight when layout is daylight etc by xiangpin <xshuangbin@163.com> 2022-08-02 14:24:36 +0800;
  • 19d342b6 Merge pull request <a href="#517">#517</a> from xiangpin/master by Guangchuang Yu <guangchuangyu@gmail.com> 2022-07-21 17:21:37 +0800;
  • 721e162d hclust for all layout and update geom_tiplab type of dendrogram layout by xiangpin <xshuangbin@163.com> 2022-07-20 20:05:44 +0800;
  • 510fba31 adjust the label of dendrogram layout by xiangpin <xshuangbin@163.com> 2022-07-20 15:05:35 +0800;
  • bf7a47fd update plot method for hclust-like class by xiangpin <xshuangbin@163.com> 2022-07-20 00:02:24 +0800;
  • 4c620351 update docs by Guangchuang Yu <guangchuangyu@gmail.com> 2022-07-19 11:13:41 +0800;
  • eb9dfe1d Merge pull request <a href="#516">#516</a> from xiangpin/master by Guangchuang Yu <guangchuangyu@gmail.com> 2022-07-19 11:13:22 +0800;
  • 90b2ed06 clone the env before assign layout by xiangpin <xshuangbin@163.com> 2022-07-18 20:06:05 +0800;
  • 297227e8 Merge remote-tracking branch 'upstream/master' into dev_for_new_ggplot2 by xiangpin <xshuangbin@163.com> 2022-07-13 10:25:14 +0800;
  • 78138d3b update by Guangchuang Yu <guangchuangyu@gmail.com> 2022-07-09 15:33:16 +0800;
  • 1086942c bug fixed by Guangchuang Yu <guangchuangyu@gmail.com> 2022-07-08 11:41:17 +0800;
  • a6fb68a7 Merge pull request <a href="#514">#514</a> from xiangpin/master by Guangchuang Yu <guangchuangyu@gmail.com> 2022-07-08 11:27:23 +0800;
  • 69f2dbbf rename size aesthetic according to ggplot2 (3.4.0) by xiangpin <xshuangbin@163.com> 2022-07-07 20:57:13 +0800;
  • d2fa81f7 fix bug of layoutEqualAngle by xiangpin <xshuangbin@163.com> 2022-07-06 21:33:17 +0800;
  • 2aad9c49 update docs by Guangchuang Yu <guangchuangyu@gmail.com> 2022-06-23 11:18:21 +0800;
  • fb83671c Merge pull request <a href="#508">#508</a> from xiangpin/tiplab_dendrogram by Guangchuang Yu <guangchuangyu@gmail.com> 2022-06-23 11:16:07 +0800;
  • 65c51451 geom_tiplab better compatible with dendrogram layout by xiangpin <xshuangbin@163.com> 2022-06-22 11:17:11 +0800;
  • aa1d7126 as.phylo.hclust2 by Guangchuang Yu <guangchuangyu@gmail.com> 2022-06-21 16:59:44 +0800;
  • d91c9b22 update by Guangchuang Yu <guangchuangyu@gmail.com> 2022-06-20 15:13:19 +0800;
  • 2270b5d3 Merge pull request <a href="#506">#506</a> from LPDagallier/branch-1 by Guangchuang Yu <guangchuangyu@gmail.com> 2022-06-20 14:40:02 +0800;
  • 5ebd35a4 Add outline to nodepies (outline.color and outline.size), remove margins in theme_inset (better display of the inset on the plot) by Léo-Paul Dagallier <38457679+LPDagallier@users.noreply.github.com> 2022-06-07 11:35:08 -0400;
  • a4ef063d speed up by Guangchuang Yu <guangchuangyu@gmail.com> 2022-06-05 01:34:54 +0800;
  • 68b65a4f update_edge_hclust by Guangchuang Yu <guangchuangyu@gmail.com> 2022-06-05 01:02:02 +0800;
  • 84d26a58 Merge pull request <a href="#498">#498</a> from xiangpin/slanted.v2 by Guangchuang Yu <guangchuangyu@gmail.com> 2022-04-29 16:47:04 +0800;
  • e4a13697 remove redundant loop by xiangpin <xshuangbin@163.com> 2022-04-29 16:13:35 +0800;
  • 6343f7a1 update docs, #496, <a href="#497">#497</a> by Guangchuang Yu <guangchuangyu@gmail.com> 2022-04-29 16:02:38 +0800;
  • 5bf930f0 Merge pull request <a href="#497">#497</a> from xiangpin/slanted.v2 by Guangchuang Yu <guangchuangyu@gmail.com> 2022-04-29 15:45:30 +0800;
  • 06db4830 slanted layout when branch.length is none by xiangpin <xshuangbin@163.com> 2022-04-29 14:50:09 +0800;
  • 5734dc1f bioc3.15 by Guangchuang Yu <guangchuangyu@gmail.com> 2022-04-27 14:54:55 +0800;
  • 2bcc3e3e bioc3.15 by Guangchuang Yu <guangchuangyu@gmail.com> 2022-04-27 14:52:50 +0800;
  • b94fead0 update bioc version by Guangchuang Yu <guangchuangyu@gmail.com> 2022-04-27 14:46:11 +0800;
  • d87fe638 bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:23:33 +0000;
  • 23f08a3d bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:23:33 +0000;
  • 8f945e97 bump version by Guangchuang Yu <guangchuangyu@gmail.com> 2022-04-24 10:10:02 +0800;
  • cca5e8d5 Merge pull request <a href="#493">#493</a> from xiangpin/geom_striplab by Guangchuang Yu <guangchuangyu@gmail.com> 2022-04-22 16:55:41 +0800;
  • 2d64d4bb update geom_striplab by xiangpin <xshuangbin@163.com> 2022-04-22 16:27:22 +0800;
  • d1cb2d91 introduce to.bottom in geom_hilight by xiangpin <xshuangbin@163.com> 2022-04-22 12:10:04 +0800;
  • 4b0da351 bump version by Guangchuang Yu <guangchuangyu@gmail.com> 2022-04-14 09:47:54 +0800;
  • 7e05bcf0 mv identify to ggfun by Guangchuang Yu <guangchuangyu@gmail.com> 2022-04-01 16:21:52 +0800;
  • c94a8385 update identify() method by Guangchuang Yu <guangchuangyu@gmail.com> 2022-04-01 10:45:58 +0800;
  • fbeaa25d update man files and fixed R check by Guangchuang Yu <guangchuangyu@gmail.com> 2022-03-23 12:13:34 +0800;
  • 4a86238b Merge pull request <a href="#489">#489</a> from SanL20/dev-san by Guangchuang Yu <guangchuangyu@gmail.com> 2022-03-23 11:44:03 +0800;
  • 3c7f66c8 Document update by William Lee <1016523468@qq.com> 2022-03-22 22:46:29 +0800;
  • 3d617910 Merge branch 'YuLab-SMU:master' into dev-san by William Lee <75999371+SanL20@users.noreply.github.com> 2022-03-22 15:17:10 +0800;
  • 453d8d02 Merge pull request <a href="#485">#485</a> from xiangpin/master by Guangchuang Yu <guangchuangyu@gmail.com> 2022-03-07 16:02:36 +0800;
  • 3ee701f2 mv pillar by xiangpin <xshuangbin@163.com> 2022-03-07 14:19:21 +0800;
  • 69143d0b new tidytree version by xiangpin <xshuangbin@163.com> 2022-03-07 10:57:03 +0800;
  • a653972a update the print of refs by xiangpin <xshuangbin@163.com> 2022-03-03 11:22:04 +0800;
  • 8b95b3e6 Merge remote-tracking branch 'upstream/master' by xiangpin <xshuangbin@163.com> 2022-03-01 15:40:21 +0800;
  • f1d8298d update citation by xiangpin <xshuangbin@163.com> 2022-03-01 15:37:15 +0800;
  • 60be2d12 Merge pull request <a href="#472">#472</a> from kopperud/master by Guangchuang Yu <guangchuangyu@gmail.com> 2022-01-28 21:58:10 +0800;
  • a695ddf7 import theme_transparent from ggfun by Bjørn Tore Kopperud <kopperud@protonmail.com> 2022-01-28 12:02:50 +0100;
  • 1a0d8747 remove ggimage dependency for theme by Bjørn Tore Kopperud <kopperud@protonmail.com> 2022-01-19 15:32:58 +0100;
  • befd14c6 Update layout.R by William Lee <1016523468@qq.com> 2021-12-29 15:23:29 +0800;
  • b448e588 bump version by Guangchuang Yu <guangchuangyu@gmail.com> 2021-12-10 17:53:25 +0800;
  • 075c538b Merge pull request <a href="#461">#461</a> from xiangpin/graph_layout by Guangchuang Yu <guangchuangyu@gmail.com> 2021-12-10 17:31:38 +0800;
  • a055e962 add message of graph layout by xiangpin <xshuangbin@163.com> 2021-12-10 13:41:02 +0800;
  • a28c2cef add graph layout by xiangpin <xshuangbin@163.com> 2021-12-09 21:33:49 +0800;