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--- output: md_document: variant: gfm html_preview: false --- <!-- is generated from README.Rmd. Please edit that file --> # ggtree: an R package for visualization of phylogenetic trees with their annotation data ```{r echo=FALSE, results="hide", message=FALSE} #library("txtplot") library("badger") library("ypages") Biocpkg <- function (pkg) { sprintf("[%s](", pkg, pkg) } ``` <a href=""><img src="" height="200" align="right" /></a> [![platform](]( `r badge_bioc_release("ggtree", "green")` [![codecov](]( [![Awesome](]( <!-- [![Project Status: Active - The project has reached a stable, usable state and is being actively developed.](]( [![Bioc](]( [![Last-changedate](`r gsub('-', '--', Sys.Date())`-green.svg)]( ` r badge_devel("guangchuangyu/ggtree", "green")` ` r badge_bioc_download("ggtree", "total", "blue")` ` r badge_bioc_download("ggtree", "month", "blue")` ` r badge_bioc_download_rank("ggtree")` --> ```{r comment="", echo=FALSE, results='asis'} cat(packageDescription('ggtree')$Description) ``` For details, please visit <>. ## :writing_hand: Authors Guangchuang YU School of Basic Medical Sciences, Southern Medical University <> [![Twitter](]( [![saythanks](]( `r badger::badge_custom('follow me on', 'WeChat', 'green', '')` If you use `r Biocpkg('ggtree')` in published research, please cite the most appropriate paper(s) from this list: 1. __G Yu__. Using ggtree to visualize data on tree-like structures. __*Current Protocols in Bioinformatics*__, 2020, 69:e96. doi: [10.1002/cpbi.96]( - [Source code and data to reproduce figures in the article]( 2. __G Yu__^\*^, TTY Lam, H Zhu, Y Guan^\*^. Two methods for mapping and visualizing associated data on phylogeny using ggtree. __*Molecular Biology and Evolution*__, 2018, 35(2):3041-3043. doi: [10.1093/molbev/msy194]( - [Source code to produce Supplementary Material]( 3. __G Yu__, DK Smith, H Zhu, Y Guan, TTY Lam^\*^. ggtree: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data. __*Methods in Ecology and Evolution*__. 2017, 8(1):28-36. doi: [10.1111/2041-210X.12628]( ## :sparkling_heart: Contributing We welcome any contributions! By participating in this project you agree to abide by the terms outlined in the [Contributor Code of Conduct](