1. ggtree
  2. man
  3. r8s-class.Rd
Browse code

depends treeio

GuangchuangYu authored on 20/12/2016 16:39:07
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man/r8s-class.Rd
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-% Generated by roxygen2: do not edit by hand
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-% Please edit documentation in R/AllClasses.R
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-\docType{class}
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-\name{r8s-class}
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-\alias{r8s-class}
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-\title{Class "r8s"
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-This class stores output info from r8s}
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-\description{
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-Class "r8s"
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-This class stores output info from r8s
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-}
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-\section{Slots}{
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-
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-\describe{
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-\item{\code{file}}{input file}
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-
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-\item{\code{fields}}{available feature}
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-
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-\item{\code{treetext}}{tree text}
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-
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-\item{\code{phylo}}{multiPhylo, time tree, rate tree and absolute substitution tree}
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-
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-\item{\code{extraInfo}}{extra information}
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-}}
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-\author{
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-Guangchuang Yu \url{http://guangchuangyu.github.io}
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-}
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-\keyword{classes}
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-
Browse code

support phylip format

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@112578 bc3139a8-67e5-0310-9ffc-ced21a209358

g.yu authored on 15/01/2016 04:55:05
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man/r8s-class.Rd
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@@ -23,7 +23,7 @@ This class stores output info from r8s
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 \item{\code{extraInfo}}{extra information}
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 }}
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 \author{
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-Guangchuang Yu \url{http://ygc.name}
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+Guangchuang Yu \url{http://guangchuangyu.github.io}
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 }
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 \keyword{classes}
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Browse code

update ggtree with new features according to ggplot2 v2

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@111988 bc3139a8-67e5-0310-9ffc-ced21a209358

g.yu authored on 29/12/2015 11:53:44
Showing 1 changed files
man/r8s-class.Rd
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@@ -6,9 +6,6 @@
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 \title{Class "r8s"
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 This class stores output info from r8s}
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 \description{
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-Class "r8s"
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-This class stores output info from r8s
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-
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 Class "r8s"
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 This class stores output info from r8s
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 }
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@@ -23,21 +20,9 @@ This class stores output info from r8s
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 \item{\code{phylo}}{multiPhylo, time tree, rate tree and absolute substitution tree}
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-\item{\code{extraInfo}}{extra information}
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-
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-\item{\code{file}}{input file}
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-
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-\item{\code{fields}}{available feature}
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-
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-\item{\code{treetext}}{tree text}
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-
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-\item{\code{phylo}}{multiPhylo, time tree, rate tree and absolute substitution tree}
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-
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 \item{\code{extraInfo}}{extra information}
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 }}
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 \author{
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-Guangchuang Yu \url{http://ygc.name}
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-
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 Guangchuang Yu \url{http://ygc.name}
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 }
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 \keyword{classes}
Browse code

fixed typo in DESCRIPTION

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@111817 bc3139a8-67e5-0310-9ffc-ced21a209358

g.yu authored on 22/12/2015 04:28:22
Showing 1 changed files
man/r8s-class.Rd
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@@ -6,6 +6,9 @@
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 \title{Class "r8s"
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 This class stores output info from r8s}
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 \description{
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+Class "r8s"
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+This class stores output info from r8s
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+
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 Class "r8s"
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 This class stores output info from r8s
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 }
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@@ -20,9 +23,21 @@ This class stores output info from r8s
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 \item{\code{phylo}}{multiPhylo, time tree, rate tree and absolute substitution tree}
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+\item{\code{extraInfo}}{extra information}
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+
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+\item{\code{file}}{input file}
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+
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+\item{\code{fields}}{available feature}
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+
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+\item{\code{treetext}}{tree text}
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+
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+\item{\code{phylo}}{multiPhylo, time tree, rate tree and absolute substitution tree}
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+
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 \item{\code{extraInfo}}{extra information}
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 }}
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 \author{
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+Guangchuang Yu \url{http://ygc.name}
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+
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 Guangchuang Yu \url{http://ygc.name}
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 }
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 \keyword{classes}
Browse code

lots updates

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@111813 bc3139a8-67e5-0310-9ffc-ced21a209358

g.yu authored on 22/12/2015 04:08:02
Showing 1 changed files
man/r8s-class.Rd
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@@ -1,4 +1,4 @@
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-% Generated by roxygen2 (4.1.1): do not edit by hand
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+% Generated by roxygen2: do not edit by hand
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 % Please edit documentation in R/AllClasses.R
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 \docType{class}
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 \name{r8s-class}
Browse code

add r8s and raxml support

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@109098 bc3139a8-67e5-0310-9ffc-ced21a209358

g.yu authored on 02/10/2015 06:16:16
Showing 1 changed files
man/r8s-class.Rd
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new file mode 100644
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+% Generated by roxygen2 (4.1.1): do not edit by hand
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+% Please edit documentation in R/AllClasses.R
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+\docType{class}
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+\name{r8s-class}
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+\alias{r8s-class}
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+\title{Class "r8s"
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+This class stores output info from r8s}
8 
+\description{
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+Class "r8s"
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+This class stores output info from r8s
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+}
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+\section{Slots}{
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+
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+\describe{
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+\item{\code{file}}{input file}
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+
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+\item{\code{fields}}{available feature}
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+
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+\item{\code{treetext}}{tree text}
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+
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+\item{\code{phylo}}{multiPhylo, time tree, rate tree and absolute substitution tree}
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+
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+\item{\code{extraInfo}}{extra information}
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+}}
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+\author{
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+Guangchuang Yu \url{http://ygc.name}
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+}
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+\keyword{classes}
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+