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depends treeio

GuangchuangYu authored on 20/12/2016 16:39:07
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-% Generated by roxygen2: do not edit by hand
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-% Please edit documentation in R/AllGenerics.R, R/jplace.R
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-\docType{methods}
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-\name{get.treeinfo}
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-\alias{get.treeinfo}
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-\alias{get.treeinfo,jplace,ANY-method}
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-\title{get.treeinfo method}
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-\usage{
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-get.treeinfo(object, layout = "phylogram", ladderize = TRUE,
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-  right = FALSE, ...)
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-
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-get.treeinfo(object, layout, ladderize, right, ...)
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-}
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-\arguments{
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-\item{object}{jplace object}
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-
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-\item{layout}{layout}
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-
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-\item{ladderize}{ladderize, logical}
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-
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-\item{right}{logical, parameter for ladderize}
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-
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-\item{...}{additional parameter}
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-}
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-\value{
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-data.frame
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-}
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-\description{
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-get.treeinfo method
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-}
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-\examples{
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-jp <- system.file("extdata", "sample.jplace", package="ggtree")
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-jp <- read.jplace(jp)
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-get.treeinfo(jp)
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-}
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-\author{
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-Guangchuang Yu \url{http://ygc.name}
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-}
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-
Browse code

lots updates

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@111813 bc3139a8-67e5-0310-9ffc-ced21a209358

g.yu authored on 22/12/2015 04:08:02
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-% Generated by roxygen2 (4.1.1): do not edit by hand
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+% Generated by roxygen2: do not edit by hand
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 % Please edit documentation in R/AllGenerics.R, R/jplace.R
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 \docType{methods}
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 \name{get.treeinfo}
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@@ -26,8 +26,6 @@ get.treeinfo(object, layout, ladderize, right, ...)
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 data.frame
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 }
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 \description{
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-get.treeinfo method
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-
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 get.treeinfo method
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 }
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 \examples{
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: ca17acc22b608158936b9c2790bff2f7504f38d9

add author



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@103112 bc3139a8-67e5-0310-9ffc-ced21a209358

g.yu authored on 27/04/2015 03:15:40
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-% Generated by roxygen2 (4.1.0): do not edit by hand
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+% Generated by roxygen2 (4.1.1): do not edit by hand
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 % Please edit documentation in R/AllGenerics.R, R/jplace.R
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 \docType{methods}
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 \name{get.treeinfo}
Browse code

Adds ggtree/ seq2pathway/ sidap/ to the repos.

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@98340 bc3139a8-67e5-0310-9ffc-ced21a209358

m.carlson authored on 14/01/2015 21:22:07
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+% Generated by roxygen2 (4.1.0): do not edit by hand
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+% Please edit documentation in R/AllGenerics.R, R/jplace.R
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+\docType{methods}
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+\name{get.treeinfo}
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+\alias{get.treeinfo}
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+\alias{get.treeinfo,jplace,ANY-method}
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+\title{get.treeinfo method}
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+\usage{
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+get.treeinfo(object, layout = "phylogram", ladderize = TRUE,
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+  right = FALSE, ...)
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+
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+get.treeinfo(object, layout, ladderize, right, ...)
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+}
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+\arguments{
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+\item{object}{jplace object}
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+
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+\item{layout}{layout}
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+
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+\item{ladderize}{ladderize, logical}
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+
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+\item{right}{logical, parameter for ladderize}
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+
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+\item{...}{additional parameter}
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+}
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+\value{
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+data.frame
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+}
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+\description{
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+get.treeinfo method
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+
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+get.treeinfo method
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+}
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+\examples{
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+jp <- system.file("extdata", "sample.jplace", package="ggtree")
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+jp <- read.jplace(jp)
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+get.treeinfo(jp)
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+}
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+\author{
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+Guangchuang Yu \url{http://ygc.name}
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+}
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+