1. ggtree
  2. man
  3. geom_cladelabel.Rd
Browse code

update man files and fixed R check

Guangchuang Yu authored on 23/03/2022 04:13:34
Showing 1 changed files
man/geom_cladelabel.Rd
History View file @ fbeaa25d
... ... 
@@ -56,7 +56,7 @@ geom_cladelabel(
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 \item{parse}{logical, whether parse label}
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 \item{horizontal}{logical, whether set label to horizontal,
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-default is TRUE.}
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+defaults to TRUE.}
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 \item{...}{additional parameter}
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 }
Browse code

modified the angle of clade labels and add horizontal parameter

xiangpin authored on 15/06/2020 05:03:03
Showing 1 changed files
man/geom_cladelabel.Rd
History View file @ 47e2bd9f
... ... 
@@ -20,6 +20,7 @@ geom_cladelabel(
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   fill = NA,
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   family = "sans",
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   parse = FALSE,
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+  horizontal = TRUE,
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   ...
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 )
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 }
... ... 
@@ -54,6 +55,9 @@ geom_cladelabel(
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 \item{parse}{logical, whether parse label}
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+\item{horizontal}{logical, whether set label to horizontal,
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+default is TRUE.}
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+
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 \item{...}{additional parameter}
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 }
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 \value{
Browse code

clip="off" and update docs

Guangchuang Yu authored on 06/12/2019 03:01:17
Showing 1 changed files
man/geom_cladelabel.Rd
History View file @ fb0a330e
... ... 
@@ -4,10 +4,24 @@
4 4 
 \alias{geom_cladelabel}
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 \title{geom_cladelabel}
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 \usage{
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-geom_cladelabel(node, label, offset = 0, offset.text = 0, extend = 0,
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-  align = FALSE, barsize = 0.5, fontsize = 3.88, angle = 0,
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-  geom = "text", hjust = 0, color = NULL, fill = NA,
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-  family = "sans", parse = FALSE, ...)
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+geom_cladelabel(
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+  node,
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+  label,
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+  offset = 0,
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+  offset.text = 0,
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+  extend = 0,
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+  align = FALSE,
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+  barsize = 0.5,
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+  fontsize = 3.88,
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+  angle = 0,
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+  geom = "text",
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+  hjust = 0,
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+  color = NULL,
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+  fill = NA,
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+  family = "sans",
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+  parse = FALSE,
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+  ...
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+)
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 }
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 \arguments{
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 \item{node}{selected node}
Browse code

Cross link geom_cladelabel and geom_cladelabel2

Hugo Gruson authored on 26/06/2019 12:59:12
Showing 1 changed files
man/geom_cladelabel.Rd
History View file @ c072cd2e
... ... 
@@ -30,7 +30,7 @@ geom_cladelabel(node, label, offset = 0, offset.text = 0, extend = 0,
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 \item{geom}{one of 'text' or 'label'}
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-\item{hjust}{hjust}
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+\item{hjust}{justify text horizontally}
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 \item{color}{color for clade & label, of length 1 or 2}
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... ... 
@@ -48,6 +48,9 @@ ggplot layers
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 \description{
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 annotate a clade with bar and text label
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 }
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+\seealso{
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+\link{geom_cladelabel2}
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+}
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 \author{
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 Guangchuang Yu
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 }
Browse code

bug fixed of viewClade

Guangchuang Yu authored on 07/08/2018 12:07:15
Showing 1 changed files
man/geom_cladelabel.Rd
History View file @ c3727414
... ... 
@@ -6,8 +6,8 @@
6 6 
 \usage{
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 geom_cladelabel(node, label, offset = 0, offset.text = 0, extend = 0,
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   align = FALSE, barsize = 0.5, fontsize = 3.88, angle = 0,
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-  geom = "text", hjust = 0, color = NULL, fill = NA, family = "sans",
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-  parse = FALSE, ...)
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+  geom = "text", hjust = 0, color = NULL, fill = NA,
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+  family = "sans", parse = FALSE, ...)
11 11 
 }
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 \arguments{
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 \item{node}{selected node}
Browse code

geom_motif #148

guangchuang yu authored on 22/08/2017 08:22:37
Showing 1 changed files
man/geom_cladelabel.Rd
History View file @ 363c0555
... ... 
@@ -51,4 +51,3 @@ annotate a clade with bar and text label
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 \author{
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 Guangchuang Yu
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 }
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-
Browse code

update docs

guangchuang yu authored on 16/08/2017 02:36:13
Showing 1 changed files
man/geom_cladelabel.Rd
History View file @ f0e199ad
... ... 
@@ -51,3 +51,4 @@ annotate a clade with bar and text label
51 51 
 \author{
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 Guangchuang Yu
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 }
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+
Browse code

add extend parameter in geom_cladelabel

guangchuang yu authored on 26/07/2017 02:13:53
Showing 1 changed files
man/geom_cladelabel.Rd
History View file @ 353dfa09
... ... 
@@ -4,9 +4,10 @@
4 4 
 \alias{geom_cladelabel}
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 \title{geom_cladelabel}
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 \usage{
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-geom_cladelabel(node, label, offset = 0, offset.text = 0, align = FALSE,
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-  barsize = 0.5, fontsize = 3.88, angle = 0, geom = "text", hjust = 0,
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-  color = NULL, fill = NA, family = "sans", parse = FALSE, ...)
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+geom_cladelabel(node, label, offset = 0, offset.text = 0, extend = 0,
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+  align = FALSE, barsize = 0.5, fontsize = 3.88, angle = 0,
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+  geom = "text", hjust = 0, color = NULL, fill = NA, family = "sans",
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+  parse = FALSE, ...)
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 }
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 \arguments{
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 \item{node}{selected node}
... ... 
@@ -17,6 +18,8 @@ geom_cladelabel(node, label, offset = 0, offset.text = 0, align = FALSE,
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 \item{offset.text}{offset of text from bar}
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+\item{extend}{extend bar height}
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+
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 \item{align}{logical}
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 \item{barsize}{size of bar}
... ... 
@@ -48,4 +51,3 @@ annotate a clade with bar and text label
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 \author{
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 Guangchuang Yu
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 }
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-
Browse code

geom_cladelabel

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@120045 bc3139a8-67e5-0310-9ffc-ced21a209358

Guangchuang Yu authored on 11/08/2016 06:54:44
Showing 1 changed files
man/geom_cladelabel.Rd
History View file @ c1e35f48
... ... 
@@ -6,7 +6,7 @@
6 6 
 \usage{
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 geom_cladelabel(node, label, offset = 0, offset.text = 0, align = FALSE,
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   barsize = 0.5, fontsize = 3.88, angle = 0, geom = "text", hjust = 0,
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-  fill = NA, family = "sans", ...)
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+  color = NULL, fill = NA, family = "sans", parse = FALSE, ...)
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 }
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 \arguments{
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 \item{node}{selected node}
... ... 
@@ -29,10 +29,14 @@ geom_cladelabel(node, label, offset = 0, offset.text = 0, align = FALSE,
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 \item{hjust}{hjust}
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+\item{color}{color for clade & label, of length 1 or 2}
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+
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 \item{fill}{fill label background, only work with geom='label'}
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 \item{family}{sans by default, can be any supported font}
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+\item{parse}{logical, whether parse label}
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+
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 \item{...}{additional parameter}
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 }
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 \value{
Browse code

add family parameter in geom_cladelabel

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@114634 bc3139a8-67e5-0310-9ffc-ced21a209358

Guangchuang Yu authored on 11/03/2016 04:31:20
Showing 1 changed files
man/geom_cladelabel.Rd
History View file @ 49838f33
... ... 
@@ -6,7 +6,7 @@
6 6 
 \usage{
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 geom_cladelabel(node, label, offset = 0, offset.text = 0, align = FALSE,
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   barsize = 0.5, fontsize = 3.88, angle = 0, geom = "text", hjust = 0,
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-  fill = NA, ...)
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+  fill = NA, family = "sans", ...)
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 }
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 \arguments{
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 \item{node}{selected node}
... ... 
@@ -31,6 +31,8 @@ geom_cladelabel(node, label, offset = 0, offset.text = 0, align = FALSE,
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 \item{fill}{fill label background, only work with geom='label'}
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+\item{family}{sans by default, can be any supported font}
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+
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 \item{...}{additional parameter}
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 }
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 \value{
Browse code

update ggtree with new features according to ggplot2 v2

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@111988 bc3139a8-67e5-0310-9ffc-ced21a209358

Guangchuang Yu authored on 29/12/2015 11:53:44
Showing 1 changed files
man/geom_cladelabel.Rd
History View file @ af18d052
... ... 
@@ -27,6 +27,8 @@ geom_cladelabel(node, label, offset = 0, offset.text = 0, align = FALSE,
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 \item{geom}{one of 'text' or 'label'}
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+\item{hjust}{hjust}
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+
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 \item{fill}{fill label background, only work with geom='label'}
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 \item{...}{additional parameter}
Browse code

lots of new layers

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@111815 bc3139a8-67e5-0310-9ffc-ced21a209358

Guangchuang Yu authored on 22/12/2015 04:13:13
Showing 1 changed files
man/geom_cladelabel.Rd
History View file @ cc06d22b
1 1 
new file mode 100644
... ... 
@@ -0,0 +1,43 @@
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+% Generated by roxygen2: do not edit by hand
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+% Please edit documentation in R/geom_cladelabel.R
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+\name{geom_cladelabel}
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+\alias{geom_cladelabel}
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+\title{geom_cladelabel}
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+\usage{
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+geom_cladelabel(node, label, offset = 0, offset.text = 0, align = FALSE,
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+  barsize = 0.5, fontsize = 3.88, angle = 0, geom = "text", hjust = 0,
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+  fill = NA, ...)
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+}
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+\arguments{
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+\item{node}{selected node}
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+
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+\item{label}{clade label}
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+
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+\item{offset}{offset of bar and text from the clade}
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+
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+\item{offset.text}{offset of text from bar}
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+
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+\item{align}{logical}
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+
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+\item{barsize}{size of bar}
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+
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+\item{fontsize}{size of text}
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+
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+\item{angle}{angle of text}
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+
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+\item{geom}{one of 'text' or 'label'}
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+
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+\item{fill}{fill label background, only work with geom='label'}
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+
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+\item{...}{additional parameter}
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+}
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+\value{
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+ggplot layers
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+}
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+\description{
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+annotate a clade with bar and text label
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+}
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+\author{
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+Guangchuang Yu
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+}
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+