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os x build

guangchuang yu authored on 11/11/2016 07:12:17
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@@ -21,6 +21,7 @@ r_packages:
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   - ggplot2
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   - tidyr
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   - abind
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+  - tiff
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 env:
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   global:
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os x build

guangchuang yu authored on 11/11/2016 06:45:48
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@@ -20,6 +20,7 @@ r_packages:
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   - ape
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   - ggplot2
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   - tidyr
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+  - abind
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 env:
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   global:
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osx build missing pkgs

guangchuang yu authored on 11/11/2016 06:15:42
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@@ -17,6 +17,9 @@ apt_packages:
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 r_packages:
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   - covr
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+  - ape
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+  - ggplot2
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+  - tidyr
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 env:
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   global:
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fixed travis osx check

guangchuang yu authored on 11/11/2016 05:53:11
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@@ -3,7 +3,7 @@
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 language: r
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 r:
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   - bioc-devel
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-  
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+
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 cache: packages
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 bioc_required: true
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@@ -15,17 +15,20 @@ os:
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 apt_packages:
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   - libfftw3-dev
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+r_packages:
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+  - covr
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+
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 env:
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   global:
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     - _R_CHECK_FORCE_SUGGESTS_=False
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     - R_LIBS="http://cran.rstudio.com"
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-  
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+
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 after_failure:
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   - ./travis-tool.sh dump_logs
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-r_github_packages:
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-  - jimhester/covr
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+## r_github_packages:
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+##   - jimhester/covr
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 after_success:
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 - Rscript -e 'library(covr); codecov()'
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travis build

guangchuang yu authored on 11/10/2016 02:09:25
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new file mode 100644
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@@ -0,0 +1,37 @@
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+## reference: http://docs.travis-ci.com/user/languages/r/
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+
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+language: r
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+r:
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+  - bioc-devel
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+  
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+cache: packages
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+bioc_required: true
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+
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+os:
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+  - linux
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+  - osx
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+
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+
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+apt_packages:
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+  - libfftw3-dev
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+
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+env:
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+  global:
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+    - _R_CHECK_FORCE_SUGGESTS_=False
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+    - R_LIBS="http://cran.rstudio.com"
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+
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+  
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+after_failure:
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+  - ./travis-tool.sh dump_logs
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+
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+r_github_packages:
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+  - jimhester/covr
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+
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+after_success:
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+- Rscript -e 'library(covr); codecov()'
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+
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+## notifications:
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+##   email:
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+##     on_success: change
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+##     on_failure: change
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+
Browse code

remove site

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@122175 bc3139a8-67e5-0310-9ffc-ced21a209358

g.yu authored on 11/10/2016 02:01:09
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deleted file mode 100644
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@@ -1,37 +0,0 @@
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-## reference: http://docs.travis-ci.com/user/languages/r/
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-
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-language: r
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-r:
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-  - bioc-devel
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-  
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-cache: packages
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-bioc_required: true
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-
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-os:
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-  - linux
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-  - osx
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-
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-
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-apt_packages:
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-  - libfftw3-dev
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-
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-env:
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-  global:
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-    - _R_CHECK_FORCE_SUGGESTS_=False
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-    - R_LIBS="http://cran.rstudio.com"
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-
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-  
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-after_failure:
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-  - ./travis-tool.sh dump_logs
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-
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-r_github_packages:
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-  - jimhester/covr
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-
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-after_success:
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-- Rscript -e 'library(covr); codecov()'
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-
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-## notifications:
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-##   email:
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-##     on_success: change
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-##     on_failure: change
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-
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travis

GuangchuangYu authored on 28/08/2016 21:34:10
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@@ -2,7 +2,6 @@
2 2
 
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 language: r
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 r:
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-  - devel
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   - bioc-devel
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 cache: packages
Browse code

test travis

GuangchuangYu authored on 09/08/2016 11:09:39
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@@ -13,6 +13,9 @@ os:
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   - osx
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15 15
 
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+apt_packages:
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+  - libfftw3-dev
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+
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 env:
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   global:
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     - _R_CHECK_FORCE_SUGGESTS_=False
Browse code

test travis

GuangchuangYu authored on 09/08/2016 10:58:49
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@@ -1,34 +1,35 @@
1 1
 ## reference: http://docs.travis-ci.com/user/languages/r/
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3 3
 language: r
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+r:
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+  - devel
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+  - bioc-devel
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+  
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+cache: packages
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 bioc_required: true
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-apt_packages:
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-  - libfftw3-dev
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-
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-r_packages:
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-  - ape
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-  - phylobase
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-  - colorspace
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-  - grid
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-  - ggplot2
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-  - gridExtra
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-  - jsonlite
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-  - magrittr
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-  - reshape2
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-  - rmarkdown
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-  - testthat
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-  - knitr
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-bioc_packages:
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-  - Biostrings
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-  - EBImage
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-  - BiocStyle
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+os:
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+  - linux
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+  - osx
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+
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+
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+env:
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+  global:
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+    - _R_CHECK_FORCE_SUGGESTS_=False
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+    - R_LIBS="http://cran.rstudio.com"
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+
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 after_failure:
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   - ./travis-tool.sh dump_logs
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-notifications:
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-  email:
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-    on_success: change
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-    on_failure: change
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+r_github_packages:
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+  - jimhester/covr
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+
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+after_success:
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+- Rscript -e 'library(covr); codecov()'
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+
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+## notifications:
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+##   email:
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+##     on_success: change
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+##     on_failure: change
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Browse code

add apt_packages for compiling fftwtools pkg

GuangchuangYu authored on 22/05/2015 03:18:43
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@@ -1,6 +1,11 @@
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+## reference: http://docs.travis-ci.com/user/languages/r/
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+
1 3
 language: r
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 bioc_required: true
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+apt_packages:
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+  - libfftw3-dev
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+
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 r_packages:
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   - ape
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   - phylobase
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@@ -18,7 +23,7 @@ bioc_packages:
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   - Biostrings
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   - EBImage
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   - BiocStyle
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-
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+  
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 after_failure:
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   - ./travis-tool.sh dump_logs
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Browse code

.travis

GuangchuangYu authored on 22/05/2015 02:48:58
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@@ -1,4 +1,5 @@
1 1
 language: r
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+bioc_required: true
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 r_packages:
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   - ape
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@@ -16,7 +17,7 @@ r_packages:
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 bioc_packages:
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   - Biostrings
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   - EBImage
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-  - BioStyle
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+  - BiocStyle
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 after_failure:
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   - ./travis-tool.sh dump_logs
Browse code

Update .travis.yml

update .travis based on support of r language

Guangchuang Yu authored on 22/05/2015 02:28:29
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@@ -1,22 +1,22 @@
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-# Sample .travis.yml for R projects.
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-#
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-# See README.md for instructions, or for more configuration options,
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-# see the wiki:
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-#   https://github.com/craigcitro/r-travis/wiki
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+language: r
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-language: c
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-
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-before_install:
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-  - curl -OL http://raw.github.com/craigcitro/r-travis/master/scripts/travis-tool.sh
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-  - chmod 755 ./travis-tool.sh
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-  - ./travis-tool.sh bootstrap
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-env:
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-  global:
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-    - BIOC_USE_DEVEL="TRUE"
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-install:
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-  - ./travis-tool.sh install_bioc_deps
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-  - ./travis-tool.sh install_deps
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-script: ./travis-tool.sh run_tests
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+r_packages:
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+  - ape
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+  - phylobase
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+  - colorspace
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+  - grid
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+  - ggplot2
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+  - gridExtra
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+  - jsonlite
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+  - magrittr
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+  - reshape2
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+  - rmarkdown
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+  - testthat
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+  - knitr
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+bioc_packages:
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+  - Biostrings
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+  - EBImage
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+  - BioStyle
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 after_failure:
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   - ./travis-tool.sh dump_logs
Browse code

Update .travis.yml

Guangchuang Yu authored on 03/02/2015 07:49:01
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@@ -25,3 +25,4 @@ notifications:
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   email:
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     on_success: change
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     on_failure: change
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+
Browse code

travis

GuangchuangYu authored on 03/02/2015 07:45:23
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new file mode 100644
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@@ -0,0 +1,27 @@
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+# Sample .travis.yml for R projects.
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+#
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+# See README.md for instructions, or for more configuration options,
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+# see the wiki:
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+#   https://github.com/craigcitro/r-travis/wiki
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+
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+language: c
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+
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+before_install:
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+  - curl -OL http://raw.github.com/craigcitro/r-travis/master/scripts/travis-tool.sh
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+  - chmod 755 ./travis-tool.sh
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+  - ./travis-tool.sh bootstrap
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+env:
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+  global:
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+    - BIOC_USE_DEVEL="TRUE"
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+install:
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+  - ./travis-tool.sh install_bioc_deps
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+  - ./travis-tool.sh install_deps
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+script: ./travis-tool.sh run_tests
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+
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+after_failure:
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+  - ./travis-tool.sh dump_logs
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+
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+notifications:
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+  email:
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+    on_success: change
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+    on_failure: change