Browse code

move code to treeio

guangchuang yu authored on 21/12/2016 08:57:38
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-% Generated by roxygen2: do not edit by hand
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-% Please edit documentation in R/merge_tree.R
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-\name{merge_tree}
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-\alias{merge_tree}
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-\title{merge_tree}
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-\usage{
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-merge_tree(obj1, obj2)
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-}
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-\arguments{
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-\item{obj1}{tree object 1}
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-
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-\item{obj2}{tree object 2}
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-}
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-\value{
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-tree object
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-}
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-\description{
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-merge two tree object
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-}
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-\author{
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-Guangchuang Yu
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-}
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-
Browse code

lots updates

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@111813 bc3139a8-67e5-0310-9ffc-ced21a209358

g.yu authored on 22/12/2015 04:08:02
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-% Generated by roxygen2 (4.1.1): do not edit by hand
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+% Generated by roxygen2: do not edit by hand
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 % Please edit documentation in R/merge_tree.R
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 \name{merge_tree}
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 \alias{merge_tree}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 652bb7c24e092a61c71765d9ae2de1e384b1c408

update vignette to add example of merge_tree <2015-04-29, Wed>


Commit id: ac252d451f6b2e5b0d27c055e050e1e42a6ffe56

add examples folder in inst that contains sample data <2015-04-29, Wed>


Commit id: d3bb757a48866f960e5c3b5c4da088241a410deb

in addition to parsing beast time scale tree in XXX_year[\\.\\d]*, now supports XXX/year[\\.\\d]*


Commit id: 33d9f8a12db641fe8580a20e3a2b51f4798fd96f

update gplot, now rowname of heatmap will not be displayed <2015-04-28, Tue>


Commit id: 94b64487871856f3394ed53d1ab55a4b6abc0baa

add line break if substitution longer than 50 character <2015-04-28, Tue>


Commit id: 396f41d759d1eb1ffa2b8af9d1b9eda695afe110

support calculating branch for time scale tree


Commit id: 0ba9f78c1626ec0fa1c503ac8b6f50e363976586

update vignette


Commit id: 5510c5f96044238cdeca127c9514b9a02851ecdb

remove parsing tip sequence from mlb and mlc file <2015-04-28, Tue>


Commit id: fc375e2b9825d840855c6276cf4301802f3e5bdc

o remove tip.fasfile in read.paml_rst for rstfile already contains tip sequence <2015-04-28, Tue>


Commit id: 03109db58c26037aeab23dbaf372638edbad5f67

scale_color accepts user specific interval and output contains scale attribute that can be used for adding legend <2015-04-28, Tue>


Commit id: 7c5829cfa47d36db179fd8b0c089a5c4f34ff345

extend fortify methods to support additional fields <2015-04-28, Tue>


Commit id: 1b0d72edd2f8e299b56296bc6066259a682128ad

extend tree class to support additional info by merging two tree <2015-04-28, Tue>


Commit id: a8b2f5480b31e0bef233e0483966afc4ea5ef9d6

extend get.fields methods to support additional fields <2015-04-28, Tue>


Commit id: 70831ecc379dbfc6f77cd1373d3a0e03241bbf4d

implement merge_tree function to merge two tree objects into one



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@103244 bc3139a8-67e5-0310-9ffc-ced21a209358

g.yu authored on 29/04/2015 10:37:43
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+% Generated by roxygen2 (4.1.1): do not edit by hand
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+% Please edit documentation in R/merge_tree.R
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+\name{merge_tree}
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+\alias{merge_tree}
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+\title{merge_tree}
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+\usage{
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+merge_tree(obj1, obj2)
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+}
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+\arguments{
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+\item{obj1}{tree object 1}
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+
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+\item{obj2}{tree object 2}
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+}
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+\value{
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+tree object
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+}
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+\description{
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+merge two tree object
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+}
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+\author{
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+Guangchuang Yu
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+}
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+