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bump version

Guangchuang Yu authored on 06/11/2022 14:52:54
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1 1
 Package: ggtree
2 2
 Type: Package
3 3
 Title: an R package for visualization of tree and annotation data
4
-Version: 3.7.0.001
4
+Version: 3.7.1
5 5
 Authors@R: c(
6 6
        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), 
7 7
             comment = c(ORCID = "0000-0002-6485-8781")),
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Merge pull request #543 from xiangpin/master

update ggtree to compatible with the ggplot2 3.4.0

Guangchuang Yu authored on 06/11/2022 14:51:54 • GitHub committed on 06/11/2022 14:51:54
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geom_hilight options

Guangchuang Yu authored on 06/11/2022 07:48:45
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1 1
 Package: ggtree
2 2
 Type: Package
3 3
 Title: an R package for visualization of tree and annotation data
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-Version: 3.7.0
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+Version: 3.7.0.001
5 5
 Authors@R: c(
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        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), 
7 7
             comment = c(ORCID = "0000-0002-6485-8781")),
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Merge branch 'master' into dev_for_new_ggplot2

xiangpin authored on 06/11/2022 03:25:04
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bump x.y.z version to odd y following creation of RELEASE_3_16 branch

J Wokaty authored on 01/11/2022 15:11:01
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1 1
 Package: ggtree
2 2
 Type: Package
3 3
 Title: an R package for visualization of tree and annotation data
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-Version: 3.6.0
4
+Version: 3.7.0
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 Authors@R: c(
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        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), 
7 7
             comment = c(ORCID = "0000-0002-6485-8781")),
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bump x.y.z version to even y prior to creation of RELEASE_3_16 branch

J Wokaty authored on 01/11/2022 15:11:01
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1 1
 Package: ggtree
2 2
 Type: Package
3 3
 Title: an R package for visualization of tree and annotation data
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-Version: 3.5.3
4
+Version: 3.6.0
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 Authors@R: c(
6 6
        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), 
7 7
             comment = c(ORCID = "0000-0002-6485-8781")),
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Merge branch 'master' into dev_for_new_ggplot2

xiangpin authored on 23/08/2022 12:39:47
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bump version

Guangchuang Yu authored on 19/08/2022 08:36:03
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1 1
 Package: ggtree
2 2
 Type: Package
3 3
 Title: an R package for visualization of tree and annotation data
4
-Version: 3.5.2.992
4
+Version: 3.5.3
5 5
 Authors@R: c(
6 6
        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), 
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             comment = c(ORCID = "0000-0002-6485-8781")),
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update docs

Guangchuang Yu authored on 15/08/2022 10:06:17
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1 1
 Package: ggtree
2 2
 Type: Package
3 3
 Title: an R package for visualization of tree and annotation data
4
-Version: 3.5.2.991
4
+Version: 3.5.2.992
5 5
 Authors@R: c(
6 6
        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), 
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             comment = c(ORCID = "0000-0002-6485-8781")),
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update citation

Guangchuang Yu authored on 13/08/2022 09:45:00
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1 1
 Package: ggtree
2 2
 Type: Package
3 3
 Title: an R package for visualization of tree and annotation data
4
-Version: 3.5.2
4
+Version: 3.5.2.991
5 5
 Authors@R: c(
6 6
        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), 
7 7
             comment = c(ORCID = "0000-0002-6485-8781")),
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@@ -57,7 +57,7 @@ VignetteBuilder: knitr
57 57
 ByteCompile: true
58 58
 Encoding: UTF-8
59 59
 License: Artistic-2.0
60
-URL: https://yulab-smu.top/treedata-book/ (book), http://onlinelibrary.wiley.com/doi/10.1111/2041-210X.12628 (paper)
60
+URL: https://www.amazon.com/Integration-Manipulation-Visualization-Phylogenetic-Computational-ebook/dp/B0B5NLZR1Z/ (book), http://onlinelibrary.wiley.com/doi/10.1111/2041-210X.12628 (paper)
61 61
 BugReports: https://github.com/YuLab-SMU/ggtree/issues
62 62
 Packaged: 2014-12-03 08:16:14 UTC; root
63 63
 biocViews: Alignment, Annotation, Clustering, DataImport,
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linkage support

Guangchuang Yu authored on 11/08/2022 09:03:41
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1 1
 Package: ggtree
2 2
 Type: Package
3 3
 Title: an R package for visualization of tree and annotation data
4
-Version: 3.5.1.902
4
+Version: 3.5.2
5 5
 Authors@R: c(
6 6
        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), 
7 7
             comment = c(ORCID = "0000-0002-6485-8781")),
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@@ -37,7 +37,8 @@ Imports:
37 37
     tidytree (>= 0.3.9),
38 38
     treeio (>= 1.8.0),
39 39
     utils,
40
-    scales
40
+    scales,
41
+    stats
41 42
 Suggests:
42 43
     emojifont,
43 44
     ggimage,
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@@ -47,7 +48,6 @@ Suggests:
47 48
     knitr,
48 49
     prettydoc,
49 50
     rmarkdown,
50
-    stats,
51 51
     testthat,
52 52
     tibble,
53 53
     glue
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@@ -62,5 +62,5 @@ BugReports: https://github.com/YuLab-SMU/ggtree/issues
62 62
 Packaged: 2014-12-03 08:16:14 UTC; root
63 63
 biocViews: Alignment, Annotation, Clustering, DataImport,
64 64
     MultipleSequenceAlignment, Phylogenetics, ReproducibleResearch, Software, Visualization
65
-RoxygenNote: 7.2.0
65
+RoxygenNote: 7.2.1
66 66
 Roxygen: list(markdown = TRUE)
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update docs

Guangchuang Yu authored on 19/07/2022 03:13:41
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@@ -1,7 +1,7 @@
1 1
 Package: ggtree
2 2
 Type: Package
3 3
 Title: an R package for visualization of tree and annotation data
4
-Version: 3.5.1.901
4
+Version: 3.5.1.902
5 5
 Authors@R: c(
6 6
        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), 
7 7
             comment = c(ORCID = "0000-0002-6485-8781")),
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Merge remote-tracking branch 'upstream/master' into dev_for_new_ggplot2

xiangpin authored on 13/07/2022 02:25:14
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update

Guangchuang Yu authored on 09/07/2022 07:33:16
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@@ -1,7 +1,7 @@
1 1
 Package: ggtree
2 2
 Type: Package
3 3
 Title: an R package for visualization of tree and annotation data
4
-Version: 3.5.1.900
4
+Version: 3.5.1.901
5 5
 Authors@R: c(
6 6
        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), 
7 7
             comment = c(ORCID = "0000-0002-6485-8781")),
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rename size aesthetic according to ggplot2 (3.4.0)

xiangpin authored on 07/07/2022 12:57:13
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@@ -25,7 +25,7 @@ Imports:
25 25
     ape,
26 26
     aplot,
27 27
     dplyr,
28
-    ggplot2 (>= 3.0.0),
28
+    ggplot2 (> 3.3.6),
29 29
     grid,
30 30
     magrittr,
31 31
     methods,
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fix bug of layoutEqualAngle

xiangpin authored on 06/07/2022 13:33:17
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@@ -62,5 +62,5 @@ BugReports: https://github.com/YuLab-SMU/ggtree/issues
62 62
 Packaged: 2014-12-03 08:16:14 UTC; root
63 63
 biocViews: Alignment, Annotation, Clustering, DataImport,
64 64
     MultipleSequenceAlignment, Phylogenetics, ReproducibleResearch, Software, Visualization
65
-RoxygenNote: 7.1.2
65
+RoxygenNote: 7.2.0
66 66
 Roxygen: list(markdown = TRUE)
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update docs

Guangchuang Yu authored on 23/06/2022 03:18:21
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1 1
 Package: ggtree
2 2
 Type: Package
3 3
 Title: an R package for visualization of tree and annotation data
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-Version: 3.5.1
4
+Version: 3.5.1.900
5 5
 Authors@R: c(
6 6
        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), 
7 7
             comment = c(ORCID = "0000-0002-6485-8781")),
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as.phylo.hclust2

Guangchuang Yu authored on 21/06/2022 08:59:44
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1 1
 Package: ggtree
2 2
 Type: Package
3 3
 Title: an R package for visualization of tree and annotation data
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-Version: 3.5.0.902
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+Version: 3.5.1
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 Authors@R: c(
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        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), 
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             comment = c(ORCID = "0000-0002-6485-8781")),
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update

Guangchuang Yu authored on 20/06/2022 07:13:19
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1 1
 Package: ggtree
2 2
 Type: Package
3 3
 Title: an R package for visualization of tree and annotation data
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-Version: 3.5.0.901
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+Version: 3.5.0.902
5 5
 Authors@R: c(
6 6
        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), 
7 7
             comment = c(ORCID = "0000-0002-6485-8781")),
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update_edge_hclust

Guangchuang Yu authored on 04/06/2022 17:02:02
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1 1
 Package: ggtree
2 2
 Type: Package
3 3
 Title: an R package for visualization of tree and annotation data
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-Version: 3.5.0.900
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+Version: 3.5.0.901
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 Authors@R: c(
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        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), 
7 7
             comment = c(ORCID = "0000-0002-6485-8781")),
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update docs, #496, #497

Guangchuang Yu authored on 29/04/2022 08:02:38
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1 1
 Package: ggtree
2 2
 Type: Package
3 3
 Title: an R package for visualization of tree and annotation data
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-Version: 3.5.0
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+Version: 3.5.0.900
5 5
 Authors@R: c(
6 6
        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), 
7 7
             comment = c(ORCID = "0000-0002-6485-8781")),
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bump x.y.z version to odd y following creation of RELEASE_3_15 branch

Nitesh Turaga authored on 26/04/2022 15:23:33
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@@ -1,7 +1,7 @@
1 1
 Package: ggtree
2 2
 Type: Package
3 3
 Title: an R package for visualization of tree and annotation data
4
-Version: 3.4.0
4
+Version: 3.5.0
5 5
 Authors@R: c(
6 6
        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), 
7 7
             comment = c(ORCID = "0000-0002-6485-8781")),
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bump x.y.z version to even y prior to creation of RELEASE_3_15 branch

Nitesh Turaga authored on 26/04/2022 15:23:33
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@@ -1,7 +1,7 @@
1 1
 Package: ggtree
2 2
 Type: Package
3 3
 Title: an R package for visualization of tree and annotation data
4
-Version: 3.3.3
4
+Version: 3.4.0
5 5
 Authors@R: c(
6 6
        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), 
7 7
             comment = c(ORCID = "0000-0002-6485-8781")),
Browse code

bump version

Guangchuang Yu authored on 24/04/2022 02:10:02
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@@ -1,7 +1,7 @@
1 1
 Package: ggtree
2 2
 Type: Package
3 3
 Title: an R package for visualization of tree and annotation data
4
-Version: 3.3.2
4
+Version: 3.3.3
5 5
 Authors@R: c(
6 6
        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), 
7 7
             comment = c(ORCID = "0000-0002-6485-8781")),
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introduce to.bottom in geom_hilight

xiangpin authored on 22/04/2022 04:10:04
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@@ -42,6 +42,7 @@ Suggests:
42 42
     emojifont,
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     ggimage,
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     ggplotify,
45
+    shadowtext,
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     grDevices,
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     knitr,
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     prettydoc,
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bump version

Guangchuang Yu authored on 14/04/2022 01:47:54
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@@ -1,7 +1,7 @@
1 1
 Package: ggtree
2 2
 Type: Package
3 3
 Title: an R package for visualization of tree and annotation data
4
-Version: 3.3.1.901
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+Version: 3.3.2
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 Authors@R: c(
6 6
        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), 
7 7
             comment = c(ORCID = "0000-0002-6485-8781")),
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mv identify to ggfun

Guangchuang Yu authored on 01/04/2022 08:21:52
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@@ -23,7 +23,7 @@ Depends:
23 23
     R (>= 3.5.0)
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 Imports:
25 25
     ape,
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-    aplot (>= 0.1.3),
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+    aplot,
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     dplyr,
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     ggplot2 (>= 3.0.0),
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     grid,
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@@ -31,7 +31,7 @@ Imports:
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     methods,
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     purrr,
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     rlang,
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-    ggfun,
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+    ggfun (>= 0.0.6),
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     yulab.utils,
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     tidyr,
37 37
     tidytree (>= 0.3.9),
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update identify() method

Guangchuang Yu authored on 01/04/2022 02:45:58
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@@ -1,7 +1,7 @@
1 1
 Package: ggtree
2 2
 Type: Package
3 3
 Title: an R package for visualization of tree and annotation data
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-Version: 3.3.1.900
4
+Version: 3.3.1.901
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 Authors@R: c(
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        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), 
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             comment = c(ORCID = "0000-0002-6485-8781")),
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@@ -23,7 +23,7 @@ Depends:
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     R (>= 3.5.0)
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 Imports:
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     ape,
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-    aplot (>= 0.0.4),
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+    aplot (>= 0.1.3),
27 27
     dplyr,
28 28
     ggplot2 (>= 3.0.0),
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     grid,
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update man files and fixed R check

Guangchuang Yu authored on 23/03/2022 04:13:34
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@@ -1,15 +1,18 @@
1 1
 Package: ggtree
2 2
 Type: Package
3 3
 Title: an R package for visualization of tree and annotation data
4
-Version: 3.3.1
4
+Version: 3.3.1.900
5 5
 Authors@R: c(
6
-       person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
6
+       person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), 
7
+            comment = c(ORCID = "0000-0002-6485-8781")),
7 8
        person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
8
-       person("Shuangbin", "Xu",       email = "xshuangbin@163.com",      role = "aut", comment = c(ORCID="0000-0003-3513-5362")),
9
-       person("Yonghe", "Xia",         email = "xiayh17@gmail.com",       role = "ctb"),
10
-       person("Justin", "Silverman",   email = "jsilve24@gmail.com",      role = "ctb"),
9
+       person("Shuangbin", "Xu",       email = "xshuangbin@163.com",      role = "aut", 
10
+            comment = c(ORCID="0000-0003-3513-5362")),
11
+       person("Lin", " Li",            email = "williamlee2220@qq.com",   role = "ctb"),
11 12
        person("Bradley", "Jones",      email = "bjones@cfenet.ubc.ca",    role = "ctb"),
13
+       person("Justin", "Silverman",   email = "jsilve24@gmail.com",      role = "ctb"),
12 14
        person("Watal M.", "Iwasaki",   email = "heavy.watal@gmail.com",   role = "ctb"),
15
+       person("Yonghe", "Xia",         email = "xiayh17@gmail.com",       role = "ctb"),
13 16
        person("Ruizhu", "Huang",       email = "ruizhuRH@gmail.com",      role = "ctb")
14 17
        )
15 18
 Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Browse code

mv pillar

xiangpin authored on 07/03/2022 06:19:21
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@@ -34,8 +34,7 @@ Imports:
34 34
     tidytree (>= 0.3.9),
35 35
     treeio (>= 1.8.0),
36 36
     utils,
37
-    scales,
38
-    pillar
37
+    scales
39 38
 Suggests:
40 39
     emojifont,
41 40
     ggimage,
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new tidytree version

xiangpin authored on 07/03/2022 02:57:03
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31 31
     ggfun,
32 32
     yulab.utils,
33 33
     tidyr,
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-    tidytree (>= 0.2.6),
34
+    tidytree (>= 0.3.9),
35 35
     treeio (>= 1.8.0),
36 36
     utils,
37 37
     scales,
Browse code

update citation

xiangpin authored on 01/03/2022 07:37:15
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@@ -34,7 +34,8 @@ Imports:
34 34
     tidytree (>= 0.2.6),
35 35
     treeio (>= 1.8.0),
36 36
     utils,
37
-    scales
37
+    scales,
38
+    pillar
38 39
 Suggests:
39 40
     emojifont,
40 41
     ggimage,
Browse code

bump version

Guangchuang Yu authored on 10/12/2021 09:53:25
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@@ -1,7 +1,7 @@
1 1
 Package: ggtree
2 2
 Type: Package
3 3
 Title: an R package for visualization of tree and annotation data
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-Version: 3.3.0.901
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+Version: 3.3.1
5 5
 Authors@R: c(
6 6
        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
7 7
        person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
Browse code

add message of graph layout

xiangpin authored on 10/12/2021 05:41:02
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@@ -45,7 +45,8 @@ Suggests:
45 45
     rmarkdown,
46 46
     stats,
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     testthat,
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-    tibble
48
+    tibble,
49
+    glue
49 50
 Remotes:
50 51
     GuangchuangYu/treeio
51 52
 VignetteBuilder: knitr
Browse code

scale_color_subtree

Guangchuang Yu authored on 01/12/2021 08:14:20
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@@ -1,7 +1,7 @@
1 1
 Package: ggtree
2 2
 Type: Package
3 3
 Title: an R package for visualization of tree and annotation data
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-Version: 3.3.0.900
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+Version: 3.3.0.901
5 5
 Authors@R: c(
6 6
        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
7 7
        person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
Browse code

set na.value="white" in msaplot()

Guangchuang Yu authored on 29/10/2021 08:09:56
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@@ -1,7 +1,7 @@
1 1
 Package: ggtree
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 Type: Package
3 3
 Title: an R package for visualization of tree and annotation data
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-Version: 3.3.0
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+Version: 3.3.0.900
5 5
 Authors@R: c(
6 6
        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
7 7
        person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
Browse code

bump x.y.z version to odd y following creation of RELEASE_3_14 branch

Nitesh Turaga authored on 26/10/2021 16:18:34
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@@ -1,7 +1,7 @@
1 1
 Package: ggtree
2 2
 Type: Package
3 3
 Title: an R package for visualization of tree and annotation data
4
-Version: 3.2.0
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+Version: 3.3.0
5 5
 Authors@R: c(
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        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
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        person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
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bump x.y.z version to even y prior to creation of RELEASE_3_14 branch

Nitesh Turaga authored on 26/10/2021 16:18:34
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 Package: ggtree
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 Type: Package
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 Title: an R package for visualization of tree and annotation data
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-Version: 3.1.6
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+Version: 3.2.0
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 Authors@R: c(
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        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
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        person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
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add paper url

Guangchuang Yu authored on 21/10/2021 09:56:36
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@@ -52,7 +52,7 @@ VignetteBuilder: knitr
52 52
 ByteCompile: true
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 Encoding: UTF-8
54 54
 License: Artistic-2.0
55
-URL: https://yulab-smu.top/treedata-book/
55
+URL: https://yulab-smu.top/treedata-book/ (book), http://onlinelibrary.wiley.com/doi/10.1111/2041-210X.12628 (paper)
56 56
 BugReports: https://github.com/YuLab-SMU/ggtree/issues
57 57
 Packaged: 2014-12-03 08:16:14 UTC; root
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 biocViews: Alignment, Annotation, Clustering, DataImport,
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bump version

Guangchuang Yu authored on 20/10/2021 03:09:01
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 Package: ggtree
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 Type: Package
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 Title: an R package for visualization of tree and annotation data
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-Version: 3.1.5.902
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+Version: 3.1.6
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 Authors@R: c(
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        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
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        person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
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update news

Guangchuang Yu authored on 14/10/2021 01:59:58
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1 1
 Package: ggtree
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 Type: Package
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 Title: an R package for visualization of tree and annotation data
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-Version: 3.1.5.901
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+Version: 3.1.5.902
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 Authors@R: c(
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        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
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        person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
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Merge remote-tracking branch 'upstream/master'

xiangpin authored on 13/10/2021 11:00:26
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extend of geom_cladelab supports two element vector

xiangpin authored on 13/10/2021 11:00:11
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@@ -57,5 +57,5 @@ BugReports: https://github.com/YuLab-SMU/ggtree/issues
57 57
 Packaged: 2014-12-03 08:16:14 UTC; root
58 58
 biocViews: Alignment, Annotation, Clustering, DataImport,
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     MultipleSequenceAlignment, Phylogenetics, ReproducibleResearch, Software, Visualization
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-RoxygenNote: 7.1.1
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+RoxygenNote: 7.1.2
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 Roxygen: list(markdown = TRUE)
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update docs

Guangchuang Yu authored on 12/10/2021 08:54:53
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 Package: ggtree
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 Type: Package
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 Title: an R package for visualization of tree and annotation data
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-Version: 3.1.5.900
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+Version: 3.1.5.901
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 Authors@R: c(
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        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
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        person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
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update docs

Guangchuang Yu authored on 29/09/2021 07:39:23
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 Package: ggtree
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 Type: Package
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 Title: an R package for visualization of tree and annotation data
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-Version: 3.1.5
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+Version: 3.1.5.900
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 Authors@R: c(
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        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
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        person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
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bump version

Guangchuang Yu authored on 28/09/2021 02:28:22
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 Package: ggtree
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 Type: Package
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 Title: an R package for visualization of tree and annotation data
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-Version: 3.1.4.993
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+Version: 3.1.5
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 Authors@R: c(
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        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
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        person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
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update docs

Guangchuang Yu authored on 27/09/2021 01:45:34
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 Package: ggtree
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 Type: Package
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 Title: an R package for visualization of tree and annotation data
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-Version: 3.1.4.992
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+Version: 3.1.4.993
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 Authors@R: c(
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        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
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        person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
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fixed R check

Guangchuang Yu authored on 15/09/2021 02:29:08
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 Package: ggtree
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 Type: Package
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 Title: an R package for visualization of tree and annotation data
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-Version: 3.1.4.991
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+Version: 3.1.4.992
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 Authors@R: c(
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        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
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        person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
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update docs

Guangchuang Yu authored on 03/09/2021 08:47:25
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 Package: ggtree
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 Type: Package
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 Title: an R package for visualization of tree and annotation data
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-Version: 3.1.4
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+Version: 3.1.4.991
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 Authors@R: c(
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        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
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        person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
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bump version

Guangchuang Yu authored on 30/08/2021 07:41:48
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1 1
 Package: ggtree
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 Type: Package
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 Title: an R package for visualization of tree and annotation data
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-Version: 3.1.3.993
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+Version: 3.1.4
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 Authors@R: c(
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        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
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        person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
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update docs

Guangchuang Yu authored on 22/08/2021 03:57:17
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 Package: ggtree
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 Type: Package
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 Title: an R package for visualization of tree and annotation data
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-Version: 3.1.3.992
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+Version: 3.1.3.993
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 Authors@R: c(
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        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
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        person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
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update docs

Guangchuang Yu authored on 20/08/2021 07:12:33
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1 1
 Package: ggtree
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 Type: Package
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 Title: an R package for visualization of tree and annotation data
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-Version: 3.1.3.991
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+Version: 3.1.3.992
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 Authors@R: c(
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        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
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        person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
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remove rvcheck depend

xiangpin authored on 18/08/2021 06:27:37
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@@ -28,7 +28,8 @@ Imports:
28 28
     methods,
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     purrr,
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     rlang,
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-    rvcheck,
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+    ggfun,
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+    yulab.utils,
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     tidyr,
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     tidytree (>= 0.2.6),
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     treeio (>= 1.8.0),
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update docs

Guangchuang Yu authored on 14/08/2021 09:09:12
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1 1
 Package: ggtree
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 Type: Package
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 Title: an R package for visualization of tree and annotation data
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-Version: 3.1.3
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+Version: 3.1.3.991
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 Authors@R: c(
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        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
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        person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
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bump up version

Guangchuang Yu authored on 10/08/2021 08:59:12
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1 1
 Package: ggtree
2 2
 Type: Package
3 3
 Title: an R package for visualization of tree and annotation data
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-Version: 3.1.2.992
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+Version: 3.1.3
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 Authors@R: c(
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        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
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        person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
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update docs

Guangchuang Yu authored on 28/07/2021 07:35:07
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1 1
 Package: ggtree
2 2
 Type: Package
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 Title: an R package for visualization of tree and annotation data
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-Version: 3.1.2.991
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+Version: 3.1.2.992
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 Authors@R: c(
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        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
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        person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
Browse code

update news

Guangchuang Yu authored on 06/07/2021 13:15:54
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1 1
 Package: ggtree
2 2
 Type: Package
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 Title: an R package for visualization of tree and annotation data
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-Version: 3.1.2
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+Version: 3.1.2.991
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 Authors@R: c(
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        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
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        person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
Browse code

bump version up

Guangchuang Yu authored on 21/06/2021 02:21:27
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1 1
 Package: ggtree
2 2
 Type: Package
3 3
 Title: an R package for visualization of tree and annotation data
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-Version: 3.1.1.992
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+Version: 3.1.2
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 Authors@R: c(
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        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
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        person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
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update docs

Guangchuang Yu authored on 11/06/2021 09:02:22
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1 1
 Package: ggtree
2 2
 Type: Package
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 Title: an R package for visualization of tree and annotation data
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-Version: 3.1.1.991
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+Version: 3.1.1.992
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 Authors@R: c(
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        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
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        person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
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update docs

Guangchuang Yu authored on 04/06/2021 07:24:02
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1 1
 Package: ggtree
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 Type: Package
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 Title: an R package for visualization of tree and annotation data
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-Version: 3.1.1
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+Version: 3.1.1.991
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 Authors@R: c(
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        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
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        person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
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bug fixed

Guangchuang Yu authored on 01/06/2021 09:22:43
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1 1
 Package: ggtree
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 Type: Package
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 Title: an R package for visualization of tree and annotation data
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-Version: 3.1.0.991
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+Version: 3.1.1
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 Authors@R: c(
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        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
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        person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
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update docs

Guangchuang Yu authored on 01/06/2021 02:25:38
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1 1
 Package: ggtree
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 Type: Package
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 Title: an R package for visualization of tree and annotation data
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-Version: 3.1.0
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+Version: 3.1.0.991
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 Authors@R: c(
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        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
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        person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
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bump x.y.z version to odd y following creation of RELEASE_3_13 branch

Nitesh Turaga authored on 19/05/2021 16:10:46
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1 1
 Package: ggtree
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 Type: Package
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 Title: an R package for visualization of tree and annotation data
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-Version: 3.0.0
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+Version: 3.1.0
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 Authors@R: c(
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        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
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        person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
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bump x.y.z version to even y prior to creation of RELEASE_3_13 branch

Nitesh Turaga authored on 19/05/2021 16:10:46
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1 1
 Package: ggtree
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 Type: Package
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 Title: an R package for visualization of tree and annotation data
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-Version: 2.99.0
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+Version: 3.0.0
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 Authors@R: c(
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        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
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        person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
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bump version up

Guangchuang Yu authored on 11/05/2021 07:24:10
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1 1
 Package: ggtree
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 Type: Package
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 Title: an R package for visualization of tree and annotation data
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-Version: 2.5.3
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+Version: 2.99.0
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 Authors@R: c(
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        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
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        person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
Browse code

bump version

Guangchuang Yu authored on 10/05/2021 04:27:52
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1 1
 Package: ggtree
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 Type: Package
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 Title: an R package for visualization of tree and annotation data
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-Version: 2.5.2
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+Version: 2.5.3
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 Authors@R: c(
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        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
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        person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
Browse code

update docs

Guangchuang Yu authored on 07/04/2021 08:44:10
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1 1
 Package: ggtree
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 Type: Package
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 Title: an R package for visualization of tree and annotation data
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-Version: 2.5.1.9002
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+Version: 2.5.2
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 Authors@R: c(
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        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
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        person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
Browse code

update news

Guangchuang Yu authored on 30/03/2021 04:10:17
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1 1
 Package: ggtree
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 Type: Package
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 Title: an R package for visualization of tree and annotation data
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-Version: 2.5.1.9001
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+Version: 2.5.1.9002
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 Authors@R: c(
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        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
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        person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
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update docs

Guangchuang Yu authored on 25/02/2021 01:54:42
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1 1
 Package: ggtree
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 Type: Package
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 Title: an R package for visualization of tree and annotation data
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-Version: 2.5.1
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+Version: 2.5.1.9001
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 Authors@R: c(
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        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
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        person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
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v2.5.1

Guangchuang Yu authored on 08/01/2021 07:39:52
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 Package: ggtree
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 Title: an R package for visualization of tree and annotation data
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-Version: 2.5.0.993
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+Version: 2.5.1
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 Authors@R: c(
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        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
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        person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
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update news

Guangchuang Yu authored on 23/12/2020 01:12:44
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1 1
 Package: ggtree
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 Type: Package
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 Title: an R package for visualization of tree and annotation data
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-Version: 2.5.0.992
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+Version: 2.5.0.993
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 Authors@R: c(
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        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
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        person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
Browse code

update docs

Guangchuang Yu authored on 26/11/2020 06:52:14
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1 1
 Package: ggtree
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 Type: Package
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 Title: an R package for visualization of tree and annotation data
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-Version: 2.5.0.991
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+Version: 2.5.0.992
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 Authors@R: c(
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        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
7 7
        person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
Browse code

bump version

Guangchuang Yu authored on 29/10/2020 00:40:31
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1 1
 Package: ggtree
2 2
 Type: Package
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 Title: an R package for visualization of tree and annotation data
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-Version: 2.5.0
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+Version: 2.5.0.991
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 Authors@R: c(
6 6
        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
7 7
        person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
Browse code

bump x.y.z version to odd y following creation of RELEASE_3_12 branch

Nitesh Turaga authored on 27/10/2020 15:02:08
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 Package: ggtree
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 Type: Package
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 Title: an R package for visualization of tree and annotation data
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-Version: 2.4.0
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+Version: 2.5.0
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 Authors@R: c(
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        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
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        person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
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bump x.y.z version to even y prior to creation of RELEASE_3_12 branch

Nitesh Turaga authored on 27/10/2020 15:02:08
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 Package: ggtree
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 Type: Package
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 Title: an R package for visualization of tree and annotation data
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-Version: 2.3.7
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+Version: 2.4.0
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 Authors@R: c(
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        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
7 7
        person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
Browse code

bump up version

Guangchuang Yu authored on 10/10/2020 08:11:20
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1 1
 Package: ggtree
2 2
 Type: Package
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 Title: an R package for visualization of tree and annotation data
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-Version: 2.3.6.991
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+Version: 2.3.7
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 Authors@R: c(
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        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
7 7
        person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
Browse code

label_pad

Guangchuang Yu authored on 09/10/2020 15:27:38
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 Package: ggtree
2 2
 Type: Package
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 Title: an R package for visualization of tree and annotation data
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-Version: 2.3.6
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+Version: 2.3.6.991
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 Authors@R: c(
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        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
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        person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
Browse code

bump version up

Guangchuang Yu authored on 09/10/2020 03:09:26
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1 1
 Package: ggtree
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 Type: Package
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 Title: an R package for visualization of tree and annotation data
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-Version: 2.3.5.993
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+Version: 2.3.6
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 Authors@R: c(
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        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
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        person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
Browse code

fortify method for treedataList

Guangchuang Yu authored on 20/09/2020 06:49:31
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1 1
 Package: ggtree
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 Type: Package
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 Title: an R package for visualization of tree and annotation data
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-Version: 2.3.5.992
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+Version: 2.3.5.993
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 Authors@R: c(
6 6
        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
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        person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
Browse code

ggexpand

Guangchuang Yu authored on 18/09/2020 08:19:27
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1 1
 Package: ggtree
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 Type: Package
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 Title: an R package for visualization of tree and annotation data
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-Version: 2.3.5.991
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+Version: 2.3.5.992
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 Authors@R: c(
6 6
        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
7 7
        person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
Browse code

update docs

Guangchuang Yu authored on 17/09/2020 01:45:18
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1 1
 Package: ggtree
2 2
 Type: Package
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 Title: an R package for visualization of tree and annotation data
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-Version: 2.3.5
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+Version: 2.3.5.991
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 Authors@R: c(
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        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
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        person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
Browse code

td_unnest

Guangchuang Yu authored on 14/09/2020 02:14:03
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1 1
 Package: ggtree
2 2
 Type: Package
3 3
 Title: an R package for visualization of tree and annotation data
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-Version: 2.3.4.993
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+Version: 2.3.5
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 Authors@R: c(
6 6
        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
7 7
        person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
Browse code

update docs

Guangchuang Yu authored on 03/09/2020 02:53:24
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@@ -1,7 +1,7 @@
1 1
 Package: ggtree
2 2
 Type: Package
3 3
 Title: an R package for visualization of tree and annotation data
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-Version: 2.3.4.992
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+Version: 2.3.4.993
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 Authors@R: c(
6 6
        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
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        person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
Browse code

shadowtext

Guangchuang Yu authored on 02/09/2020 08:44:40
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1 1
 Package: ggtree
2 2
 Type: Package
3 3
 Title: an R package for visualization of tree and annotation data
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-Version: 2.3.4.991
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+Version: 2.3.4.992
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 Authors@R: c(
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        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
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        person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
Browse code

tree_filter

Guangchuang Yu authored on 29/08/2020 05:49:35
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1 1
 Package: ggtree
2 2
 Type: Package
3 3
 Title: an R package for visualization of tree and annotation data
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-Version: 2.3.4
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+Version: 2.3.4.991
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 Authors@R: c(
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        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
7 7
        person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
Browse code

update url

Guangchuang Yu authored on 27/08/2020 03:45:40
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@@ -51,7 +51,7 @@ VignetteBuilder: knitr
51 51
 ByteCompile: true
52 52
 Encoding: UTF-8
53 53
 License: Artistic-2.0
54
-URL: https://yulab-smu.github.io/treedata-book/
54
+URL: https://yulab-smu.top/treedata-book/
55 55
 BugReports: https://github.com/YuLab-SMU/ggtree/issues
56 56
 Packaged: 2014-12-03 08:16:14 UTC; root
57 57
 biocViews: Alignment, Annotation, Clustering, DataImport,
Browse code

update geom_point2 manual

Guangchuang Yu authored on 25/08/2020 03:22:29
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@@ -6,6 +6,7 @@ Authors@R: c(
6 6
        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
7 7
        person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
8 8
        person("Shuangbin", "Xu",       email = "xshuangbin@163.com",      role = "aut", comment = c(ORCID="0000-0003-3513-5362")),
9
+       person("Yonghe", "Xia",         email = "xiayh17@gmail.com",       role = "ctb"),
9 10
        person("Justin", "Silverman",   email = "jsilve24@gmail.com",      role = "ctb"),
10 11
        person("Bradley", "Jones",      email = "bjones@cfenet.ubc.ca",    role = "ctb"),
11 12
        person("Watal M.", "Iwasaki",   email = "heavy.watal@gmail.com",   role = "ctb"),
Browse code

zoomClade and geom_zoom_clade

Guangchuang Yu authored on 03/08/2020 16:21:17
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1 1
 Package: ggtree
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 Type: Package
3 3
 Title: an R package for visualization of tree and annotation data
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-Version: 2.3.3.993
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+Version: 2.3.4
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 Authors@R: c(
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        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
7 7
        person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
Browse code

remove functions

Guangchuang Yu authored on 28/07/2020 07:02:57
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1 1
 Package: ggtree
2 2
 Type: Package
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 Title: an R package for visualization of tree and annotation data
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-Version: 2.3.3.992
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+Version: 2.3.3.993
5 5
 Authors@R: c(
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        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
7 7
        person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
Browse code

as_ylab in geom_tiplab()

Guangchuang Yu authored on 28/07/2020 06:04:40
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1 1
 Package: ggtree
2 2
 Type: Package
3 3
 Title: an R package for visualization of tree and annotation data
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-Version: 2.3.3.991
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+Version: 2.3.3.992
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 Authors@R: c(
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        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
7 7
        person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
Browse code

hexpand

Guangchuang Yu authored on 27/07/2020 11:40:01
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1 1
 Package: ggtree
2 2
 Type: Package
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 Title: an R package for visualization of tree and annotation data
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-Version: 2.3.3
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+Version: 2.3.3.991
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 Authors@R: c(
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        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
7 7
        person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
Browse code

bump version up and commit to bioconductor

Guangchuang Yu authored on 23/07/2020 07:31:36
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@@ -1,7 +1,7 @@
1 1
 Package: ggtree
2 2
 Type: Package
3 3
 Title: an R package for visualization of tree and annotation data
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-Version: 2.3.2.993
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+Version: 2.3.3
5 5
 Authors@R: c(
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        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
7 7
        person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
Browse code

update docs

Guangchuang Yu authored on 22/07/2020 09:34:15
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@@ -1,11 +1,11 @@
1 1
 Package: ggtree
2 2
 Type: Package
3 3
 Title: an R package for visualization of tree and annotation data
4
-Version: 2.3.2.992
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+Version: 2.3.2.993
5 5
 Authors@R: c(
6 6
        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
7 7
        person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
8
-       person("Shuangbin", "Xu",       email = "xshuangbin@163.com",      role = "ctb", comment = c(ORCID="0000-0003-3513-5362")),
8
+       person("Shuangbin", "Xu",       email = "xshuangbin@163.com",      role = "aut", comment = c(ORCID="0000-0003-3513-5362")),
9 9
        person("Justin", "Silverman",   email = "jsilve24@gmail.com",      role = "ctb"),
10 10
        person("Bradley", "Jones",      email = "bjones@cfenet.ubc.ca",    role = "ctb"),
11 11
        person("Watal M.", "Iwasaki",   email = "heavy.watal@gmail.com",   role = "ctb"),
Browse code

geom_taxalink supports aes mapping

Guangchuang Yu authored on 20/07/2020 14:59:17
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1 1
 Package: ggtree
2 2
 Type: Package
3 3
 Title: an R package for visualization of tree and annotation data
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-Version: 2.3.2.991
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+Version: 2.3.2.992
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 Authors@R: c(
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        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
7 7
        person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
Browse code

layout_inward_circular

Guangchuang Yu authored on 16/07/2020 10:30:54
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1 1
 Package: ggtree
2 2
 Type: Package
3 3
 Title: an R package for visualization of tree and annotation data
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-Version: 2.3.2
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+Version: 2.3.2.991
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 Authors@R: c(
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        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
7 7
        person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
Browse code

import alpha from scales

xiangpin authored on 16/07/2020 03:30:45
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@@ -31,7 +31,8 @@ Imports:
31 31
     tidyr,
32 32
     tidytree (>= 0.2.6),
33 33
     treeio (>= 1.8.0),
34
-    utils
34
+    utils,
35
+    scales
35 36
 Suggests:
36 37
     emojifont,
37 38
     ggimage,
... ...
@@ -40,7 +41,6 @@ Suggests:
40 41
     knitr,
41 42
     prettydoc,
42 43
     rmarkdown,
43
-    scales,
44 44
     stats,
45 45
     testthat,
46 46
     tibble
Browse code

update doc

xiangpin authored on 13/07/2020 13:35:46
Showing1 changed files
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@@ -3,14 +3,14 @@ Type: Package
3 3
 Title: an R package for visualization of tree and annotation data
4 4
 Version: 2.3.2
5 5
 Authors@R: c(
6
-	   person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
7
-	   person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
8
-    person("Shuangbin", "Xu",        email = "xshuangbin@163.com",      role = "ctb",           comment = c(ORCID="0000-0003-3513-5362")),
9
-	   person("Justin", "Silverman",   email = "jsilve24@gmail.com",      role = "ctb"),
10
-	   person("Bradley", "Jones",      email = "bjones@cfenet.ubc.ca",    role = "ctb"),
11
-	   person("Watal M.", "Iwasaki",   email = "heavy.watal@gmail.com",   role = "ctb"),
12
-	   person("Ruizhu", "Huang",       email = "ruizhuRH@gmail.com",      role = "ctb")
13
-	   )
6
+       person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
7
+       person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
8
+       person("Shuangbin", "Xu",       email = "xshuangbin@163.com",      role = "ctb", comment = c(ORCID="0000-0003-3513-5362")),
9
+       person("Justin", "Silverman",   email = "jsilve24@gmail.com",      role = "ctb"),
10
+       person("Bradley", "Jones",      email = "bjones@cfenet.ubc.ca",    role = "ctb"),
11
+       person("Watal M.", "Iwasaki",   email = "heavy.watal@gmail.com",   role = "ctb"),
12
+       person("Ruizhu", "Huang",       email = "ruizhuRH@gmail.com",      role = "ctb")
13
+       )
14 14
 Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
15 15
 Description: 'ggtree' extends the 'ggplot2' plotting system which implemented
16 16
     the grammar of graphics. 'ggtree' is designed for visualization and annotation
Browse code

update version and docs

xiangpin authored on 13/07/2020 03:05:20
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@@ -1,7 +1,7 @@
1 1
 Package: ggtree
2 2
 Type: Package
3 3
 Title: an R package for visualization of tree and annotation data
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-Version: 2.3.1
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+Version: 2.3.2
5 5
 Authors@R: c(
6 6
 	   person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
7 7
 	   person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
... ...
@@ -55,5 +55,5 @@ BugReports: https://github.com/YuLab-SMU/ggtree/issues
55 55
 Packaged: 2014-12-03 08:16:14 UTC; root
56 56
 biocViews: Alignment, Annotation, Clustering, DataImport,
57 57
     MultipleSequenceAlignment, Phylogenetics, ReproducibleResearch, Software, Visualization
58
-RoxygenNote: 7.1.0
58
+RoxygenNote: 7.1.1
59 59
 Roxygen: list(markdown = TRUE)
Browse code

Add 'Phylogenetics' to biocViews

'Phylogenetics' is endorsed as valid BiocViews by Bioconductor.

Chengyang Ji authored on 28/06/2020 09:56:34 • GitHub committed on 28/06/2020 09:56:34
Showing1 changed files
... ...
@@ -54,6 +54,6 @@ URL: https://yulab-smu.github.io/treedata-book/
54 54
 BugReports: https://github.com/YuLab-SMU/ggtree/issues
55 55
 Packaged: 2014-12-03 08:16:14 UTC; root
56 56
 biocViews: Alignment, Annotation, Clustering, DataImport,
57
-    MultipleSequenceAlignment, ReproducibleResearch, Software, Visualization
57
+    MultipleSequenceAlignment, Phylogenetics, ReproducibleResearch, Software, Visualization
58 58
 RoxygenNote: 7.1.0
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 Roxygen: list(markdown = TRUE)
Browse code

fortify method for pvclust

Guangchuang Yu authored on 22/06/2020 02:48:45
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@@ -1,7 +1,7 @@
1 1
 Package: ggtree
2 2
 Type: Package
3 3
 Title: an R package for visualization of tree and annotation data
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-Version: 2.3.0.992
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+Version: 2.3.1
5 5
 Authors@R: c(
6 6
 	   person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
7 7
 	   person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
Browse code

update docs

Guangchuang Yu authored on 15/06/2020 07:37:01
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@@ -5,8 +5,9 @@ Version: 2.3.0.992
5 5
 Authors@R: c(
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 	   person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
7 7
 	   person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
8
+    person("Shuangbin", "Xu",        email = "xshuangbin@163.com",      role = "ctb",           comment = c(ORCID="0000-0003-3513-5362")),
8 9
 	   person("Justin", "Silverman",   email = "jsilve24@gmail.com",      role = "ctb"),
9
-	   person("Bradley", "Jones",      email = "bjones@cfenet.ubc.ca",             role = "ctb"),
10
+	   person("Bradley", "Jones",      email = "bjones@cfenet.ubc.ca",    role = "ctb"),
10 11
 	   person("Watal M.", "Iwasaki",   email = "heavy.watal@gmail.com",   role = "ctb"),
11 12
 	   person("Ruizhu", "Huang",       email = "ruizhuRH@gmail.com",      role = "ctb")
12 13
 	   )
Browse code

add version and update log of version

xiangpin authored on 15/06/2020 05:03:37
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... ...
@@ -1,7 +1,7 @@
1 1
 Package: ggtree
2 2
 Type: Package
3 3
 Title: an R package for visualization of tree and annotation data
4
-Version: 2.3.0.991
4
+Version: 2.3.0.992
5 5
 Authors@R: c(
6 6
 	   person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
7 7
 	   person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
Browse code

bug fixed

Guangchuang Yu authored on 13/05/2020 10:20:21
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@@ -1,7 +1,7 @@
1 1
 Package: ggtree
2 2
 Type: Package
3 3
 Title: an R package for visualization of tree and annotation data
4
-Version: 2.3.0
4
+Version: 2.3.0.991
5 5
 Authors@R: c(
6 6
 	   person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
7 7
 	   person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
Browse code

bump x.y.z version to odd y following creation of RELEASE_3_11 branch

Nitesh Turaga authored on 27/04/2020 18:46:26
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@@ -1,7 +1,7 @@
1 1
 Package: ggtree
2 2
 Type: Package
3 3
 Title: an R package for visualization of tree and annotation data
4
-Version: 2.2.0
4
+Version: 2.3.0
5 5
 Authors@R: c(
6 6
 	   person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
7 7
 	   person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
Browse code

bump x.y.z version to even y prior to creation of RELEASE_3_11 branch

Nitesh Turaga authored on 27/04/2020 18:46:26
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... ...
@@ -1,7 +1,7 @@
1 1
 Package: ggtree
2 2
 Type: Package
3 3
 Title: an R package for visualization of tree and annotation data
4
-Version: 2.1.6
4
+Version: 2.2.0
5 5
 Authors@R: c(
6 6
 	   person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
7 7
 	   person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
Browse code

child #287

Guangchuang Yu authored on 13/04/2020 08:50:46
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... ...
@@ -54,5 +54,5 @@ BugReports: https://github.com/YuLab-SMU/ggtree/issues
54 54
 Packaged: 2014-12-03 08:16:14 UTC; root
55 55
 biocViews: Alignment, Annotation, Clustering, DataImport,
56 56
     MultipleSequenceAlignment, ReproducibleResearch, Software, Visualization
57
-RoxygenNote: 7.0.2
57
+RoxygenNote: 7.1.0
58 58
 Roxygen: list(markdown = TRUE)
Browse code

bump version

Guangchuang Yu authored on 09/04/2020 02:08:39
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@@ -1,7 +1,7 @@
1 1
 Package: ggtree
2 2
 Type: Package
3 3
 Title: an R package for visualization of tree and annotation data
4
-Version: 2.1.5
4
+Version: 2.1.6
5 5
 Authors@R: c(
6 6
 	   person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
7 7
 	   person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
Browse code

import xrange from aplot

Guangchuang Yu authored on 07/04/2020 09:39:43
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... ...
@@ -15,10 +15,10 @@ Description: 'ggtree' extends the 'ggplot2' plotting system which implemented
15 15
     the grammar of graphics. 'ggtree' is designed for visualization and annotation
16 16
     of phylogenetic trees and other tree-like structures with their annotation data.
17 17
 Depends:
18
-    R (>= 3.4.0)
18
+    R (>= 3.5.0)
19 19
 Imports:
20 20
     ape,
21
-    aplot,
21
+    aplot (>= 0.0.4),
22 22
     dplyr,
23 23
     ggplot2 (>= 3.0.0),
24 24
     grid,
Browse code

import aplot

Guangchuang Yu authored on 07/04/2020 09:02:46
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... ...
@@ -1,7 +1,7 @@
1 1
 Package: ggtree
2 2
 Type: Package
3 3
 Title: an R package for visualization of tree and annotation data
4
-Version: 2.1.4
4
+Version: 2.1.5
5 5
 Authors@R: c(
6 6
 	   person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
7 7
 	   person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
... ...
@@ -18,6 +18,7 @@ Depends:
18 18
     R (>= 3.4.0)
19 19
 Imports:
20 20
     ape,
21
+    aplot,
21 22
     dplyr,
22 23
     ggplot2 (>= 3.0.0),
23 24
     grid,
... ...
@@ -31,7 +32,6 @@ Imports:
31 32
     treeio (>= 1.8.0),
32 33
     utils
33 34
 Suggests:
34
-    aplot,
35 35
     emojifont,
36 36
     ggimage,
37 37
     ggplotify,
Browse code

bump version

Guangchuang Yu authored on 03/04/2020 02:04:07
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... ...
@@ -1,7 +1,7 @@
1 1
 Package: ggtree
2 2
 Type: Package
3 3
 Title: an R package for visualization of tree and annotation data
4
-Version: 2.1.3
4
+Version: 2.1.4
5 5
 Authors@R: c(
6 6
 	   person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
7 7
 	   person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
Guangchuang Yu authored on 31/03/2020 04:16:05
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... ...
@@ -31,6 +31,7 @@ Imports:
31 31
     treeio (>= 1.8.0),
32 32
     utils
33 33
 Suggests:
34
+    aplot,
34 35
     emojifont,
35 36
     ggimage,
36 37
     ggplotify,
Browse code

bug fixed, #282

Guangchuang Yu authored on 16/03/2020 06:27:18
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... ...
@@ -1,7 +1,7 @@
1 1
 Package: ggtree
2 2
 Type: Package
3 3
 Title: an R package for visualization of tree and annotation data
4
-Version: 2.1.2
4
+Version: 2.1.3
5 5
 Authors@R: c(
6 6
 	   person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
7 7
 	   person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
Browse code

bug fixed

Guangchuang Yu authored on 26/01/2020 15:25:32
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... ...
@@ -1,7 +1,7 @@
1 1
 Package: ggtree
2 2
 Type: Package
3 3
 Title: an R package for visualization of tree and annotation data
4
-Version: 2.1.1
4
+Version: 2.1.2
5 5
 Authors@R: c(
6 6
 	   person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
7 7
 	   person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
Browse code

merged; fixed example; changed Brad Jones email

brj1 authored on 06/12/2019 22:27:49
Showing0 changed files
Browse code

added example to ggdensitree andnew example file

brj1 authored on 06/12/2019 21:48:17
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... ...
@@ -53,5 +53,5 @@ BugReports: https://github.com/YuLab-SMU/ggtree/issues
53 53
 Packaged: 2014-12-03 08:16:14 UTC; root
54 54
 biocViews: Alignment, Annotation, Clustering, DataImport,
55 55
     MultipleSequenceAlignment, ReproducibleResearch, Software, Visualization
56
-RoxygenNote: 6.1.1
56
+RoxygenNote: 7.0.1
57 57
 Roxygen: list(markdown = TRUE)
Browse code

clip="off" and update docs

Guangchuang Yu authored on 06/12/2019 03:01:17
Showing1 changed files
... ...
@@ -53,5 +53,5 @@ BugReports: https://github.com/YuLab-SMU/ggtree/issues
53 53
 Packaged: 2014-12-03 08:16:14 UTC; root
54 54
 biocViews: Alignment, Annotation, Clustering, DataImport,
55 55
     MultipleSequenceAlignment, ReproducibleResearch, Software, Visualization
56
-RoxygenNote: 6.1.1
56
+RoxygenNote: 7.0.2
57 57
 Roxygen: list(markdown = TRUE)
Browse code

roxygen2md

Guangchuang Yu authored on 01/11/2019 04:24:00
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... ...
@@ -54,3 +54,4 @@ Packaged: 2014-12-03 08:16:14 UTC; root
54 54
 biocViews: Alignment, Annotation, Clustering, DataImport,
55 55
     MultipleSequenceAlignment, ReproducibleResearch, Software, Visualization
56 56
 RoxygenNote: 6.1.1
57
+Roxygen: list(markdown = TRUE)
Browse code

fixed warning

Guangchuang Yu authored on 30/10/2019 02:03:01
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@@ -1,7 +1,7 @@
1 1
 Package: ggtree
2 2
 Type: Package
3 3
 Title: an R package for visualization of tree and annotation data
4
-Version: 2.1.0
4
+Version: 2.1.1
5 5
 Authors@R: c(
6 6
 	   person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
7 7
 	   person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
Browse code

bump x.y.z version to odd y after creation of RELEASE_3_10 branch

Nitesh Turaga authored on 29/10/2019 17:38:52
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... ...
@@ -1,7 +1,7 @@
1 1
 Package: ggtree
2 2
 Type: Package
3 3
 Title: an R package for visualization of tree and annotation data
4
-Version: 2.0.0
4
+Version: 2.1.0
5 5
 Authors@R: c(
6 6
 	   person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
7 7
 	   person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
Browse code

bump x.y.z version to even y prior to creation of RELEASE_3_10 branch

Nitesh Turaga authored on 29/10/2019 17:09:08
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... ...
@@ -1,7 +1,7 @@
1 1
 Package: ggtree
2 2
 Type: Package
3 3
 Title: an R package for visualization of tree and annotation data
4
-Version: 1.99.1
4
+Version: 2.0.0
5 5
 Authors@R: c(
6 6
 	   person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
7 7
 	   person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
Browse code

ggdensitree

Guangchuang Yu authored on 11/09/2019 01:39:19
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... ...
@@ -1,7 +1,7 @@
1 1
 Package: ggtree
2 2
 Type: Package
3 3
 Title: an R package for visualization of tree and annotation data
4
-Version: 1.99.0
4
+Version: 1.99.1
5 5
 Authors@R: c(
6 6
 	   person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
7 7
 	   person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
Browse code

1.99.0

Guangchuang Yu authored on 02/09/2019 07:19:41
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... ...
@@ -1,7 +1,7 @@
1 1
 Package: ggtree
2 2
 Type: Package
3 3
 Title: an R package for visualization of tree and annotation data
4
-Version: 1.17.5
4
+Version: 1.99.0
5 5
 Authors@R: c(
6 6
 	   person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
7 7
 	   person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
Browse code

fortify methods for agnes, diana and twins

Guangchuang Yu authored on 30/08/2019 05:01:11
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... ...
@@ -36,10 +36,10 @@ Suggests:
36 36
     ggplotify,
37 37
     grDevices,
38 38
     knitr,
39
-    phylogram,
40 39
     prettydoc,
41 40
     rmarkdown,
42 41
     scales,
42
+    stats,
43 43
     testthat,
44 44
     tibble
45 45
 Remotes:
Browse code

support phylog

Guangchuang Yu authored on 21/08/2019 05:59:44
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... ...
@@ -1,7 +1,7 @@
1 1
 Package: ggtree
2 2
 Type: Package
3 3
 Title: an R package for visualization of tree and annotation data
4
-Version: 1.17.4
4
+Version: 1.17.5
5 5
 Authors@R: c(
6 6
 	   person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
7 7
 	   person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
Browse code

update docs

Guangchuang Yu authored on 09/08/2019 03:45:53
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... ...
@@ -13,7 +13,7 @@ Authors@R: c(
13 13
 Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
14 14
 Description: 'ggtree' extends the 'ggplot2' plotting system which implemented
15 15
     the grammar of graphics. 'ggtree' is designed for visualization and annotation
16
-    of phylogenetic trees and other tree-like structure with their associated data.
16
+    of phylogenetic trees and other tree-like structures with their annotation data.
17 17
 Depends:
18 18
     R (>= 3.4.0)
19 19
 Imports:
Browse code

update docs

Guangchuang Yu authored on 09/08/2019 03:42:00
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... ...
@@ -1,7 +1,6 @@
1 1
 Package: ggtree
2 2
 Type: Package
3
-Title: an R package for visualization and annotation of phylogenetic trees with
4
-    their covariates and other associated data
3
+Title: an R package for visualization of tree and annotation data
5 4
 Version: 1.17.4
6 5
 Authors@R: c(
7 6
 	   person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
... ...