1. ggtree
  2. inst
  3. examples
  4. NAG_inHA1.txt
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 8ac2c857e0925891c1fcc68ee4e9869e4df05ccb

update add_colorbar



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@103435 bc3139a8-67e5-0310-9ffc-ced21a209358

g.yu authored on 04/05/2015 13:23:10
Showing 1 changed files
inst/examples/NAG_inHA1.txt
History View file @ 4d953959
... ... 
@@ -1,76 +1,151 @@
1 
-A/Swine/Binh_Duong/03_08/2010	6
2 
-A/Swine/Binh_Duong/03_10/2010	6
3 
-A/Swine/HK/2503/2011	7
4 
-A/Swine/HK_NS2439/2011	7
5 
-A/Swine/GX_NS2783/2010	7
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-A/Swine/GD/3767/2011	7
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8 
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22 
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24 
-A/Swine/HK_NS1651/2012	7
25 
-A/Swine/HK_NS2733/2012	7
26 
-A/Swine/HK/3280/2012	7
27 
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28 
-A/Swine/GD_NS2701/2012	8
29 
-A/Swine/GD_NS2892/2012	8
30 
-A/Swine/GD/2919/2012	6
31 
-A/Swine/HK_NS2698/2012	8
32 
-A/Ho_Chi_Minh/459.6/2010	7
33 
-A/Netherlands/42/2006	10
34 
-A/Malaysia/29890/2004	11
35 
-A/New_York/334/2004	11
36 
-A/New_York/463/2005	11
37 
-A/New_York/238/2005	11
38 
-A/HaNoi/BM544/2004	10
39 
-A/Hong_Kong/HKU39/2004	11
40 
-A/Malaysia/29997/2004	10
41 
-A/Western_Australia/38/2003	10
42 
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43 
-A/Hanoi/BM767/2003	12
44 
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45 
-A/Brisbane/09/2006	11
46 
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47 
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48 
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49 
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50 
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51 
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52 
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53 
-A/California/VRDL165/2009	10
54 
-A/California/UR07-0017/2008	11
55 
-A/Ohio/UR07-0105/2008	10
56 
-A/Kyrgyzstan/WRAIR1255P/2008	11
57 
-A/Thailand/CU370/2008	11
58 
-A/Moscow/RII05/2012	11
59 
-A/Hokkaido/30-1-a/2013	12
60 
-A/Czech_Republic/119/2012	11
61 
-A/Petrozavodsk/RII01/2012	11
62 
-A/New_York/20342/2010	11
63 
-A/Boston/DOA52/2011	11
64 
-A/Czech_Republic/126/2012	11
65 
-A/Singapore/H2010.559C/2010	11
66 
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67 
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76 
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1 
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2 
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3 
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4 
+A/Swine/HK_NS2439/2011	6
5 
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6 
+A/Swine/GD/3767/2011	6
7 
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8 
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9 
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10 
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11 
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12 
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13 
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14 
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15 
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16 
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17 
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18 
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19 
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22 
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23 
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24 
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25 
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26 
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27 
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28 
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29 
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30 
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31 
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32 
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33 
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34 
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35 
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36 
+A/New_York/463/2005	9
37 
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38 
+A/HaNoi/BM544/2004	8
39 
+A/Hong_Kong/HKU39/2004	9
40 
+A/Malaysia/29997/2004	8
41 
+A/Western_Australia/38/2003	8
42 
+A/Moscow/328/2003	9
43 
+A/Hanoi/BM767/2003	9
44 
+A/California/UR06-0589/2007	9
45 
+A/Brisbane/09/2006	9
46 
+A/Tokyo/Ut-Sk-1/2007	7
47 
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48 
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50 
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54 
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56 
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57 
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62 
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63 
+A/Boston/DOA52/2011	9
64 
+A/Czech_Republic/126/2012	9
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66 
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67 
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68 
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69 
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70 
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71 
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72 
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73 
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74 
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75 
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76 
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77 152 
\ No newline at end of file
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 652bb7c24e092a61c71765d9ae2de1e384b1c408

update vignette to add example of merge_tree <2015-04-29, Wed>


Commit id: ac252d451f6b2e5b0d27c055e050e1e42a6ffe56

add examples folder in inst that contains sample data <2015-04-29, Wed>


Commit id: d3bb757a48866f960e5c3b5c4da088241a410deb

in addition to parsing beast time scale tree in XXX_year[\\.\\d]*, now supports XXX/year[\\.\\d]*


Commit id: 33d9f8a12db641fe8580a20e3a2b51f4798fd96f

update gplot, now rowname of heatmap will not be displayed <2015-04-28, Tue>


Commit id: 94b64487871856f3394ed53d1ab55a4b6abc0baa

add line break if substitution longer than 50 character <2015-04-28, Tue>


Commit id: 396f41d759d1eb1ffa2b8af9d1b9eda695afe110

support calculating branch for time scale tree


Commit id: 0ba9f78c1626ec0fa1c503ac8b6f50e363976586

update vignette


Commit id: 5510c5f96044238cdeca127c9514b9a02851ecdb

remove parsing tip sequence from mlb and mlc file <2015-04-28, Tue>


Commit id: fc375e2b9825d840855c6276cf4301802f3e5bdc

o remove tip.fasfile in read.paml_rst for rstfile already contains tip sequence <2015-04-28, Tue>


Commit id: 03109db58c26037aeab23dbaf372638edbad5f67

scale_color accepts user specific interval and output contains scale attribute that can be used for adding legend <2015-04-28, Tue>


Commit id: 7c5829cfa47d36db179fd8b0c089a5c4f34ff345

extend fortify methods to support additional fields <2015-04-28, Tue>


Commit id: 1b0d72edd2f8e299b56296bc6066259a682128ad

extend tree class to support additional info by merging two tree <2015-04-28, Tue>


Commit id: a8b2f5480b31e0bef233e0483966afc4ea5ef9d6

extend get.fields methods to support additional fields <2015-04-28, Tue>


Commit id: 70831ecc379dbfc6f77cd1373d3a0e03241bbf4d

implement merge_tree function to merge two tree objects into one



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@103244 bc3139a8-67e5-0310-9ffc-ced21a209358

g.yu authored on 29/04/2015 10:37:43
Showing 1 changed files
inst/examples/NAG_inHA1.txt
History View file @ bbc1de08
1 1 
new file mode 100644
... ... 
@@ -0,0 +1,76 @@
1 
+A/Swine/Binh_Duong/03_08/2010	6
2 
+A/Swine/Binh_Duong/03_10/2010	6
3 
+A/Swine/HK/2503/2011	7
4 
+A/Swine/HK_NS2439/2011	7
5 
+A/Swine/GX_NS2783/2010	7
6 
+A/Swine/GD/3767/2011	7
7 
+A/Swine/GX/2242/2011	7
8 
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9 
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10 
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30 
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31 
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32 
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33 
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34 
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35 
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36 
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37 
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38 
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39 
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40 
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41 
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43 
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44 
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60 
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61 
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62 
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63 
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64 
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65 
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66 
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67 
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68 
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69 
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70 
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71 
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72 
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