1. ggtree
  2. man
  3. theme_tree2.Rd
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update man files and fixed R check

Guangchuang Yu authored on 23/03/2022 04:13:34
Showing 1 changed files
man/theme_tree2.Rd
History View file @ fbeaa25d
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@@ -7,9 +7,9 @@
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 theme_tree2(bgcolor = "white", fgcolor = "black", ...)
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 }
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 \arguments{
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-\item{bgcolor}{background color}
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+\item{bgcolor}{set background color, defaults to "white"}
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-\item{fgcolor}{foreground color}
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+\item{fgcolor}{set foreground color, defaults to "black"}
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 \item{...}{additional parameter}
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 }
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@@ -19,6 +19,9 @@ updated ggplot object with new theme
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 \description{
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 tree2 theme
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 }
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+\details{
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+'theme_tree2' supports displaying phylogenetic distance by setting x-axis
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+}
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 \examples{
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 require(ape)
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 tr <- rtree(10)
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tree layout

Guangchuang Yu authored on 24/07/2019 07:38:11
Showing 1 changed files
man/theme_tree2.Rd
History View file @ d3057fa1
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@@ -25,5 +25,5 @@ tr <- rtree(10)
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 ggtree(tr) + theme_tree2()
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 }
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 \author{
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-Yu Guangchuang
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+Guangchuang Yu
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 }
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geom_motif #148

guangchuang yu authored on 22/08/2017 08:22:37
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man/theme_tree2.Rd
History View file @ 363c0555
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@@ -27,4 +27,3 @@ ggtree(tr) + theme_tree2()
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 \author{
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 Yu Guangchuang
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 }
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-
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update docs

guangchuang yu authored on 16/08/2017 02:36:13
Showing 1 changed files
man/theme_tree2.Rd
History View file @ f0e199ad
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@@ -27,3 +27,4 @@ ggtree(tr) + theme_tree2()
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 \author{
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 Yu Guangchuang
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 }
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+
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add extend parameter in geom_cladelabel

guangchuang yu authored on 26/07/2017 02:13:53
Showing 1 changed files
man/theme_tree2.Rd
History View file @ 353dfa09
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@@ -27,4 +27,3 @@ ggtree(tr) + theme_tree2()
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 \author{
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 Yu Guangchuang
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 }
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-
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update ggtree with new features according to ggplot2 v2

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@111988 bc3139a8-67e5-0310-9ffc-ced21a209358

Guangchuang Yu authored on 29/12/2015 11:53:44
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man/theme_tree2.Rd
History View file @ af18d052
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@@ -1,5 +1,5 @@
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 % Generated by roxygen2: do not edit by hand
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-% Please edit documentation in R/ggtree.R
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+% Please edit documentation in R/theme.R
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 \name{theme_tree2}
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 \alias{theme_tree2}
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 \title{theme_tree2}
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lots updates

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@111813 bc3139a8-67e5-0310-9ffc-ced21a209358

Guangchuang Yu authored on 22/12/2015 04:08:02
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man/theme_tree2.Rd
History View file @ 6c9cd355
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@@ -1,4 +1,4 @@
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-% Generated by roxygen2 (4.1.1): do not edit by hand
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+% Generated by roxygen2: do not edit by hand
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 % Please edit documentation in R/ggtree.R
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 \name{theme_tree2}
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 \alias{theme_tree2}
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better geom_tree/groupClade/groupOTU implementation & annotation_clade/annotation_clade2 functions

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@106946 bc3139a8-67e5-0310-9ffc-ced21a209358

Guangchuang Yu authored on 31/07/2015 10:15:38
Showing 1 changed files
man/theme_tree2.Rd
History View file @ 94bf49f9
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@@ -4,12 +4,14 @@
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 \alias{theme_tree2}
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 \title{theme_tree2}
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 \usage{
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-theme_tree2(bgcolor = "white", fgcolor = "black")
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+theme_tree2(bgcolor = "white", fgcolor = "black", ...)
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 }
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 \arguments{
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 \item{bgcolor}{background color}
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 \item{fgcolor}{foreground color}
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+
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+\item{...}{additional parameter}
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 }
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 \value{
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 updated ggplot object with new theme
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Commit made by the Bioconductor Git-SVN bridge.

Commit id: ca17acc22b608158936b9c2790bff2f7504f38d9

add author



git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@103112 bc3139a8-67e5-0310-9ffc-ced21a209358

Guangchuang Yu authored on 27/04/2015 03:15:40
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man/theme_tree2.Rd
History View file @ b893400f
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@@ -1,4 +1,4 @@
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-% Generated by roxygen2 (4.1.0): do not edit by hand
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+% Generated by roxygen2 (4.1.1): do not edit by hand
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 % Please edit documentation in R/ggtree.R
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 \name{theme_tree2}
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 \alias{theme_tree2}
Browse code

Adds ggtree/ seq2pathway/ sidap/ to the repos.

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@98340 bc3139a8-67e5-0310-9ffc-ced21a209358

Marc Carlson authored on 14/01/2015 21:22:07
Showing 1 changed files
man/theme_tree2.Rd
History View file @ 0c8aaf33
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new file mode 100644
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@@ -0,0 +1,28 @@
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+% Generated by roxygen2 (4.1.0): do not edit by hand
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+% Please edit documentation in R/ggtree.R
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+\name{theme_tree2}
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+\alias{theme_tree2}
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+\title{theme_tree2}
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+\usage{
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+theme_tree2(bgcolor = "white", fgcolor = "black")
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+}
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+\arguments{
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+\item{bgcolor}{background color}
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+
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+\item{fgcolor}{foreground color}
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+}
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+\value{
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+updated ggplot object with new theme
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+}
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+\description{
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+tree2 theme
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+}
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+\examples{
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+require(ape)
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+tr <- rtree(10)
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+ggtree(tr) + theme_tree2()
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+}
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+\author{
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+Yu Guangchuang
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+}
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+