1. ggtree
  2. man
  3. scale_x_ggtree.Rd
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update man files and fixed R check

Guangchuang Yu authored on 23/03/2022 04:13:34
Showing 1 changed files
man/scale_x_ggtree.Rd
History View file @ fbeaa25d
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@@ -7,7 +7,7 @@
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 scale_x_ggtree(breaks = waiver(), labels = waiver())
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 }
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 \arguments{
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-\item{breaks}{breaks for tree}
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+\item{breaks}{set breaks for tree}
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 \item{labels}{lables for corresponding breaks}
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 }
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@@ -17,6 +17,15 @@ updated tree view
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 \description{
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 scale x for tree with gheatmap
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 }
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+\details{
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+Since setting x-axis for tree with gheatmap by using 'theme_tree2()' is quite tricky,
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+'scale_x_ggtree' can help set the x-axis more reasonably.
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+}
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+\references{
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+For more detailed demonstration of this function, please refer to chapter 7.3 of
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+\emph{Data Integration, Manipulation and Visualization of Phylogenetic Trees}
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+\url{http://yulab-smu.top/treedata-book/index.html} by Guangchuang Yu.
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+}
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 \author{
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 Guangchuang Yu
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 }
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update scale_x_ggtree

Guangchuang Yu authored on 22/05/2019 14:09:37
Showing 1 changed files
man/scale_x_ggtree.Rd
History View file @ e5c982fb
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@@ -1,23 +1,21 @@
1 1 
 % Generated by roxygen2: do not edit by hand
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-% Please edit documentation in R/experimental_function.R
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+% Please edit documentation in R/scales.R
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 \name{scale_x_ggtree}
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 \alias{scale_x_ggtree}
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 \title{scale_x_ggtree}
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 \usage{
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-scale_x_ggtree(tree_view, breaks = NULL, labels = NULL)
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+scale_x_ggtree(breaks = waiver(), labels = waiver())
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 }
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 \arguments{
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-\item{tree_view}{tree view}
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-
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 \item{breaks}{breaks for tree}
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 \item{labels}{lables for corresponding breaks}
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 }
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 \value{
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-tree view
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+updated tree view
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 }
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 \description{
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-scale x for tree with heatmap
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+scale x for tree with gheatmap
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 }
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 \author{
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 Guangchuang Yu
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geom_motif #148

guangchuang yu authored on 22/08/2017 08:22:37
Showing 1 changed files
man/scale_x_ggtree.Rd
History View file @ 363c0555
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@@ -22,4 +22,3 @@ scale x for tree with heatmap
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 \author{
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 Guangchuang Yu
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 }
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-
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update docs

guangchuang yu authored on 16/08/2017 02:36:13
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man/scale_x_ggtree.Rd
History View file @ f0e199ad
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@@ -22,3 +22,4 @@ scale x for tree with heatmap
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 \author{
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 Guangchuang Yu
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 }
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+
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add extend parameter in geom_cladelabel

guangchuang yu authored on 26/07/2017 02:13:53
Showing 1 changed files
man/scale_x_ggtree.Rd
History View file @ 353dfa09
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@@ -22,4 +22,3 @@ scale x for tree with heatmap
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 \author{
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 Guangchuang Yu
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 }
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-
Browse code

use plot

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@115874 bc3139a8-67e5-0310-9ffc-ced21a209358

Guangchuang Yu authored on 06/04/2016 08:34:24
Showing 1 changed files
man/scale_x_ggtree.Rd
History View file @ 68ddfe1a
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@@ -1,5 +1,5 @@
1 1 
 % Generated by roxygen2: do not edit by hand
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-% Please edit documentation in R/gplot.R
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+% Please edit documentation in R/experimental_function.R
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 \name{scale_x_ggtree}
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 \alias{scale_x_ggtree}
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 \title{scale_x_ggtree}
Browse code

viewClade, scaleClade, collapse, expand, rotate, flip, get_taxa_name and scale_x_ggtree accepts input tree_view=NULL.

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@112503 bc3139a8-67e5-0310-9ffc-ced21a209358

Guangchuang Yu authored on 13/01/2016 07:47:55
Showing 1 changed files
man/scale_x_ggtree.Rd
History View file @ 0b5c08bd
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@@ -4,10 +4,10 @@
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 \alias{scale_x_ggtree}
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 \title{scale_x_ggtree}
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 \usage{
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-scale_x_ggtree(p, breaks = NULL, labels = NULL)
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+scale_x_ggtree(tree_view, breaks = NULL, labels = NULL)
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 }
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 \arguments{
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-\item{p}{tree view}
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+\item{tree_view}{tree view}
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 \item{breaks}{breaks for tree}
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lots updates

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@111813 bc3139a8-67e5-0310-9ffc-ced21a209358

Guangchuang Yu authored on 22/12/2015 04:08:02
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man/scale_x_ggtree.Rd
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@@ -1,4 +1,4 @@
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-% Generated by roxygen2 (4.1.1): do not edit by hand
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+% Generated by roxygen2: do not edit by hand
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 % Please edit documentation in R/gplot.R
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 \name{scale_x_ggtree}
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 \alias{scale_x_ggtree}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 7c6eb6f90218928633147306f8bacd86a5cdd944

mask & scale_x_ggtree function



git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@104466 bc3139a8-67e5-0310-9ffc-ced21a209358

Guangchuang Yu authored on 02/06/2015 10:18:54
Showing 1 changed files
man/scale_x_ggtree.Rd
History View file @ 2dc67dc5
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new file mode 100644
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@@ -0,0 +1,25 @@
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+% Generated by roxygen2 (4.1.1): do not edit by hand
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+% Please edit documentation in R/gplot.R
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+\name{scale_x_ggtree}
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+\alias{scale_x_ggtree}
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+\title{scale_x_ggtree}
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+\usage{
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+scale_x_ggtree(p, breaks = NULL, labels = NULL)
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+}
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+\arguments{
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+\item{p}{tree view}
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+
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+\item{breaks}{breaks for tree}
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+
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+\item{labels}{lables for corresponding breaks}
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+}
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+\value{
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+tree view
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+}
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+\description{
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+scale x for tree with heatmap
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+}
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+\author{
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+Guangchuang Yu
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+}
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+