Browse code

depends treeio

GuangchuangYu authored on 20/12/2016 16:39:07
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-% Generated by roxygen2: do not edit by hand
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-% Please edit documentation in R/codeml.R
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-\name{read.codeml}
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-\alias{read.codeml}
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-\title{read.codeml}
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-\usage{
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-read.codeml(rstfile, mlcfile)
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-}
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-\arguments{
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-\item{rstfile}{rst file}
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-
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-\item{mlcfile}{mlc file}
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-}
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-\value{
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-A \code{codeml} object
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-}
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-\description{
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-read baseml output
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-}
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-\examples{
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-rstfile <- system.file("extdata/PAML_Codeml", "rst", package="ggtree")
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-mlcfile <- system.file("extdata/PAML_Codeml", "mlc", package="ggtree")
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-read.codeml(rstfile, mlcfile) 
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-}
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-\author{
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-ygc
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-}
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-
Browse code

lots updates

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@111813 bc3139a8-67e5-0310-9ffc-ced21a209358

g.yu authored on 22/12/2015 04:08:02
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-% Generated by roxygen2 (4.1.1): do not edit by hand
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+% Generated by roxygen2: do not edit by hand
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 % Please edit documentation in R/codeml.R
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 \name{read.codeml}
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 \alias{read.codeml}
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 \examples{
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 rstfile <- system.file("extdata/PAML_Codeml", "rst", package="ggtree")
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 mlcfile <- system.file("extdata/PAML_Codeml", "mlc", package="ggtree")
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-read.codeml(rstfile, mlcfile)
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+read.codeml(rstfile, mlcfile) 
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 }
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 \author{
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 ygc
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: ca17acc22b608158936b9c2790bff2f7504f38d9

add author



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@103112 bc3139a8-67e5-0310-9ffc-ced21a209358

g.yu authored on 27/04/2015 03:15:40
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-% Generated by roxygen2 (4.1.0): do not edit by hand
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+% Generated by roxygen2 (4.1.1): do not edit by hand
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 % Please edit documentation in R/codeml.R
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 \name{read.codeml}
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 \alias{read.codeml}
Browse code

Adds ggtree/ seq2pathway/ sidap/ to the repos.

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@98340 bc3139a8-67e5-0310-9ffc-ced21a209358

m.carlson authored on 14/01/2015 21:22:07
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+% Generated by roxygen2 (4.1.0): do not edit by hand
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+% Please edit documentation in R/codeml.R
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+\name{read.codeml}
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+\alias{read.codeml}
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+\title{read.codeml}
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+\usage{
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+read.codeml(rstfile, mlcfile)
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+}
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+\arguments{
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+\item{rstfile}{rst file}
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+
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+\item{mlcfile}{mlc file}
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+}
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+\value{
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+A \code{codeml} object
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+}
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+\description{
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+read baseml output
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+}
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+\examples{
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+rstfile <- system.file("extdata/PAML_Codeml", "rst", package="ggtree")
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+mlcfile <- system.file("extdata/PAML_Codeml", "mlc", package="ggtree")
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+read.codeml(rstfile, mlcfile)
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+}
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+\author{
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+ygc
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+}
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+