1. ggtree
  2. man
  3. gzoom.phylo.Rd
Browse code

remove gzoom function

Guangchuang Yu authored on 08/08/2019 16:26:32
Showing 1 changed files
man/gzoom.phylo.Rd
History View file @ 4f72df86
... ... 
@@ -1,5 +1,5 @@
1 1 
 % Generated by roxygen2: do not edit by hand
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-% Please edit documentation in R/method-gzoom.R
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+% Please edit documentation in R/defunct.R
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 \name{gzoom.phylo}
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 \alias{gzoom.phylo}
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 \title{gzoom}
... ... 
@@ -21,11 +21,6 @@ a list of ggplot object
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 \description{
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 plots simultaneously a whole phylogenetic tree and a portion of it.
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 }
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-\examples{
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-require(ape)
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-data(chiroptera)
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-gzoom(chiroptera, grep("Plecotus", chiroptera$tip.label))
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-}
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 \author{
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 ygc
31 26 
 }
Browse code

geom_motif #148

guangchuang yu authored on 22/08/2017 08:22:37
Showing 1 changed files
man/gzoom.phylo.Rd
History View file @ 363c0555
... ... 
@@ -29,4 +29,3 @@ gzoom(chiroptera, grep("Plecotus", chiroptera$tip.label))
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 \author{
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 ygc
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 }
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-
Browse code

update docs

guangchuang yu authored on 16/08/2017 02:36:13
Showing 1 changed files
man/gzoom.phylo.Rd
History View file @ f0e199ad
... ... 
@@ -29,3 +29,4 @@ gzoom(chiroptera, grep("Plecotus", chiroptera$tip.label))
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 \author{
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 ygc
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 }
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+
Browse code

add extend parameter in geom_cladelabel

guangchuang yu authored on 26/07/2017 02:13:53
Showing 1 changed files
man/gzoom.phylo.Rd
History View file @ 353dfa09
... ... 
@@ -29,4 +29,3 @@ gzoom(chiroptera, grep("Plecotus", chiroptera$tip.label))
29 29 
 \author{
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 ygc
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 }
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-
Browse code

inset function and update vignette

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@112112 bc3139a8-67e5-0310-9ffc-ced21a209358

Guangchuang Yu authored on 04/01/2016 09:56:10
Showing 1 changed files
man/gzoom.phylo.Rd
History View file @ d5c2a530
... ... 
@@ -1,5 +1,5 @@
1 1 
 % Generated by roxygen2: do not edit by hand
2 
-% Please edit documentation in R/tree-utilities.R
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+% Please edit documentation in R/method-gzoom.R
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 \name{gzoom.phylo}
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 \alias{gzoom.phylo}
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 \title{gzoom}
Browse code

lots updates

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@111813 bc3139a8-67e5-0310-9ffc-ced21a209358

Guangchuang Yu authored on 22/12/2015 04:08:02
Showing 1 changed files
man/gzoom.phylo.Rd
History View file @ 6c9cd355
... ... 
@@ -1,5 +1,5 @@
1 
-% Generated by roxygen2 (4.1.1): do not edit by hand
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-% Please edit documentation in R/tree.R
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+% Generated by roxygen2: do not edit by hand
2 
+% Please edit documentation in R/tree-utilities.R
3 3 
 \name{gzoom.phylo}
4 4 
 \alias{gzoom.phylo}
5 5 
 \title{gzoom}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: ca17acc22b608158936b9c2790bff2f7504f38d9

add author



git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@103112 bc3139a8-67e5-0310-9ffc-ced21a209358

Guangchuang Yu authored on 27/04/2015 03:15:40
Showing 1 changed files
man/gzoom.phylo.Rd
History View file @ b893400f
... ... 
@@ -1,4 +1,4 @@
1 
-% Generated by roxygen2 (4.1.0): do not edit by hand
1 
+% Generated by roxygen2 (4.1.1): do not edit by hand
2 2 
 % Please edit documentation in R/tree.R
3 3 
 \name{gzoom.phylo}
4 4 
 \alias{gzoom.phylo}
Browse code

Commit made by the Bioconductor Git-SVN bridge. Consists of 3 commits.

Commit information:

Commit id: cd270be7dff4e811297283d7cd5da2826d4c60aa

update news

Committed by: GuangchuangYu
Author Name: GuangchuangYu
Commit date: 2015-02-04 16:24:25 +0800
Author date: 2015-02-04 16:24:25 +0800

Commit id: 240a0ebc95b76ce091f0c59c95d53db841127493

gzoom methods

Committed by: GuangchuangYu
Author Name: GuangchuangYu
Commit date: 2015-02-04 16:23:19 +0800
Author date: 2015-02-04 16:23:19 +0800

Commit id: 55f42d1fa0d7bcddc8cf8bcdcff87f887b215acf

geom_hilight

Committed by: GuangchuangYu
Author Name: GuangchuangYu
Commit date: 2015-02-04 15:54:42 +0800
Author date: 2015-02-04 15:54:42 +0800


git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@99033 bc3139a8-67e5-0310-9ffc-ced21a209358

Guangchuang Yu authored on 04/02/2015 08:24:48
Showing 1 changed files
man/gzoom.phylo.Rd
History View file @ cb732553
1 1 
new file mode 100644
... ... 
@@ -0,0 +1,32 @@
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+% Generated by roxygen2 (4.1.0): do not edit by hand
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+% Please edit documentation in R/tree.R
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+\name{gzoom.phylo}
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+\alias{gzoom.phylo}
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+\title{gzoom}
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+\usage{
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+gzoom.phylo(phy, focus, subtree = FALSE, widths = c(0.3, 0.7))
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+}
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+\arguments{
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+\item{phy}{phylo object}
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+
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+\item{focus}{selected tips}
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+
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+\item{subtree}{logical}
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+
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+\item{widths}{widths}
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+}
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+\value{
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+a list of ggplot object
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+}
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+\description{
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+plots simultaneously a whole phylogenetic tree and a portion of it.
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+}
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+\examples{
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+require(ape)
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+data(chiroptera)
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+gzoom(chiroptera, grep("Plecotus", chiroptera$tip.label))
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+}
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+\author{
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+ygc
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+}
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+