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update docs

Guangchuang Yu authored on 22/07/2020 09:34:15
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 + extend `gheatmap` to support collapsed nodes
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   - <https://github.com/GuangchuangYu/ggtree/pull/243>
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-# Shuangbin Xu
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-
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-+ update `geom_taxalink` to support data frame and aesthetic mapping
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-  - <https://github.com/YuLab-SMU/ggtree/pull/324>
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-+ update `geom_taxalink` to support circular layout tree
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-  - <https://github.com/YuLab-SMU/ggtree/pull/321>
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-  - <https://github.com/YuLab-SMU/ggtree/pull/323>
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-+ `horizontal` parameter for `geom_cladelabel`
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-  - <https://github.com/YuLab-SMU/ggtree/pull/309>
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-  
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geom_taxalink supports aes mapping

Guangchuang Yu authored on 20/07/2020 14:59:17
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 # Shuangbin Xu
35 35
 
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++ update `geom_taxalink` to support data frame and aesthetic mapping
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+  - <https://github.com/YuLab-SMU/ggtree/pull/324>
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 + update `geom_taxalink` to support circular layout tree
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   - <https://github.com/YuLab-SMU/ggtree/pull/321>
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   - <https://github.com/YuLab-SMU/ggtree/pull/323>
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update docs

Guangchuang Yu authored on 16/07/2020 10:06:20
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 + update `geom_taxalink` to support circular layout tree
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   - <https://github.com/YuLab-SMU/ggtree/pull/321>
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+  - <https://github.com/YuLab-SMU/ggtree/pull/323>
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 + `horizontal` parameter for `geom_cladelabel`
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   - <https://github.com/YuLab-SMU/ggtree/pull/309>
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update docs

Guangchuang Yu authored on 16/07/2020 01:51:43
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 # Shuangbin Xu
35 35
 
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++ update `geom_taxalink` to support circular layout tree
37
+  - <https://github.com/YuLab-SMU/ggtree/pull/321>
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 + `horizontal` parameter for `geom_cladelabel`
37 39
   - <https://github.com/YuLab-SMU/ggtree/pull/309>
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update docs

Guangchuang Yu authored on 15/06/2020 07:37:01
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 + extend `gheatmap` to support collapsed nodes
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   - <https://github.com/GuangchuangYu/ggtree/pull/243>
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+
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+# Shuangbin Xu
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+
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++ `horizontal` parameter for `geom_cladelabel`
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+  - <https://github.com/YuLab-SMU/ggtree/pull/309>
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+  
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fixing incorrect links

brj1 authored on 27/01/2020 22:49:39
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 # Bradley Jones
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 + ape unrooted layout
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-  - <https://github.com/YuLab-SMU/ggtree/issues/272>
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+  - <https://github.com/YuLab-SMU/ggtree/pull/273>
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 + `ggdensitree` function
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   - <https://github.com/YuLab-SMU/ggtree/pull/253>
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 + made data usable with treedata in 'equal_angle' and 'daylight' layouts 
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 # Ruizhu Huang
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 + extend `gheatmap` to support collapsed nodes
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-  - <https://github.com/GuangchuangYu/ggtree/pull/243>
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\ No newline at end of file
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+  - <https://github.com/GuangchuangYu/ggtree/pull/243>
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bug fixed

Guangchuang Yu authored on 26/01/2020 15:25:32
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 # Bradley Jones
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-
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++ ape unrooted layout
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+  - <https://github.com/YuLab-SMU/ggtree/issues/272>
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 + `ggdensitree` function
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   - <https://github.com/YuLab-SMU/ggtree/pull/253>
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 + made data usable with treedata in 'equal_angle' and 'daylight' layouts 
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ggdensitree

Guangchuang Yu authored on 11/09/2019 01:39:19
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 # Bradley Jones
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+
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++ `ggdensitree` function
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+  - <https://github.com/YuLab-SMU/ggtree/pull/253>
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 + made data usable with treedata in 'equal_angle' and 'daylight' layouts 
4 7
   - <https://github.com/GuangchuangYu/ggtree/pull/201>
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fixed R check of gheatmap and revert theme_tree to based on theme_bw

Guangchuang Yu authored on 06/08/2019 11:27:46
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22 22
   - <https://github.com/GuangchuangYu/ggtree/pull/165>
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   - <https://github.com/GuangchuangYu/ggtree/pull/169>
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+# Ruizhu Huang
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+
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++ extend `gheatmap` to support collapsed nodes
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+  - <https://github.com/GuangchuangYu/ggtree/pull/243>
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update docs

Guangchuang Yu authored on 11/10/2018 02:44:13
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+# Bradley Jones
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+
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++ made data usable with treedata in 'equal_angle' and 'daylight' layouts 
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+  - <https://github.com/GuangchuangYu/ggtree/pull/201>
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 # Justin Silverman
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 + Refactor layoutDaylight
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   - <https://github.com/GuangchuangYu/ggtree/pull/165>
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   - <https://github.com/GuangchuangYu/ggtree/pull/169>
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+
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add new contributor

guangchuang yu authored on 05/03/2018 04:34:03
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-Justin Silverman
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+# Justin Silverman
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+
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 + `geom_balance`
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 	- <https://github.com/GuangchuangYu/ggtree/pull/64>
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-JustGitting
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+# JustGitting
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+
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 + Annotation functions (`geom_hilight_encircle` & `geom_cladelabel2`) for
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   unrooted layout
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   - <https://github.com/GuangchuangYu/ggtree/pull/152>
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 + Add daylight layout for unrooted trees
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   - <https://github.com/GuangchuangYu/ggtree/pull/124>
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+
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+# Watal M. Iwasaki
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+
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++ Refactor layoutDaylight
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+  - <https://github.com/GuangchuangYu/ggtree/pull/165>
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+  - <https://github.com/GuangchuangYu/ggtree/pull/169>
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fixed R check for #152

guangchuang yu authored on 12/09/2017 10:01:00
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 JustGitting
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 ----------------
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-+ `Add daylight layout for unrooted trees`
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-  - <https://github.com/GuangchuangYu/ggtree/pull/124>
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++ Annotation functions (`geom_hilight_encircle` & `geom_cladelabel2`) for
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+  unrooted layout
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+  - <https://github.com/GuangchuangYu/ggtree/pull/152>
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++ Add daylight layout for unrooted trees
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+  - <https://github.com/GuangchuangYu/ggtree/pull/124>
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Pulled from origin (forked ggtree on github) and fixed differences.

Merge branch 'master' of https://github.com/JustGitting/ggtree

# Conflicts:
# R/geom_cladelabel.R
# R/tidytree.R

JustGitting authored on 29/06/2017 04:05:50
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Added revised geom_hilight_encircle() function to highlight clades of unrooted trees.

Fixed layoutDaylight ave_change calculation.

Fixed bug in getTreeArcAngles() for cases where the branch root node and origin node are the same.

Added getNodeEuclDistances() function.

Fixed isTip() function to check if nodes has children, instead of checking of the data variable had the isTip field set.

JustGitting authored on 29/06/2017 03:43:04
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 + `geom_balance`
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 	- <https://github.com/GuangchuangYu/ggtree/pull/64>
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+JustGitting
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+----------------
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++ `Add daylight layout for unrooted trees`
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+  - <https://github.com/GuangchuangYu/ggtree/pull/124>
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update site

guangchuang yu authored on 28/06/2017 09:58:35
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+
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 Justin Silverman
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 ----------------
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 + `geom_balance`
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update

GuangchuangYu authored on 10/04/2017 15:52:18
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-Hugo Gruson
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-+  Add legend transparency to `theme_transparent`
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-   - <https://github.com/GuangchuangYu/ggtree/pull/112>
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-
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 Justin Silverman
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 ----------------
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 + `geom_balance`
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update docs

guangchuang yu authored on 13/02/2017 05:33:14
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+Hugo Gruson
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+-----------
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++  Add legend transparency to `theme_transparent`
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+   - <https://github.com/GuangchuangYu/ggtree/pull/112>
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+
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 Justin Silverman
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 ----------------
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 + `geom_balance`
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bug fixed

guangchuang yu authored on 14/12/2016 09:07:44
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+Justin Silverman
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+----------------
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++ `geom_balance`
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+	- <https://github.com/GuangchuangYu/ggtree/pull/64>
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+