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extra vignette in homepage

guangchuang yu authored on 27/12/2017 06:01:35
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 ggtree.Rproj
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 .Rproj.user
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 ggtree
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-*.html
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+vignettes/*.html
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update msaplot to use DNAbin/AAbin

guangchuang yu authored on 14/12/2017 10:29:44
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 .web_cache
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 ggtree.Rproj
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 .Rproj.user
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-ggtree*.html
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+ggtree
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+*.html
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clean up code

guangchuang yu authored on 14/12/2017 08:47:21
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 .web_cache
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 ggtree.Rproj
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 .Rproj.user
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-ggtree
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\ No newline at end of file
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+ggtree*.html
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Merged changes from upstream into origin branches.

Merge remote-tracking branch 'upstream/master'

# Conflicts:
# R/geom_cladelabel.R
# R/geom_hilight.R

JustGitting authored on 12/09/2017 01:52:08
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rotateTreePoints.df(): Moved label tip "angle" update until after whole tree/branch was rotated.

JustGitting authored on 07/07/2017 04:53:00
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 *.ignore
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 .web_cache
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 ggtree.Rproj
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\ No newline at end of file
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Added revised geom_hilight_encircle() function to highlight clades of unrooted trees.

Fixed layoutDaylight ave_change calculation.

Fixed bug in getTreeArcAngles() for cases where the branch root node and origin node are the same.

Added getNodeEuclDistances() function.

Fixed isTip() function to check if nodes has children, instead of checking of the data variable had the isTip field set.

JustGitting authored on 29/06/2017 03:43:04
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 __init__.py
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 __pycache__
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 __init__.pyc
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-.Rproj.user
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+*.Rproj.user
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+*.RData
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+*.ignore
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+.web_cache
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 ggtree.Rproj
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-.RData
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update

GuangchuangYu authored on 10/04/2017 15:52:18
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 __init__.py
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 __pycache__
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 __init__.pyc
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-
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 .Rproj.user
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 ggtree.Rproj
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 .RData
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gitignore and Rbuildignore have been updated by RStudio. It was not my doing...

JustGitting authored on 06/04/2017 06:26:06
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 __pycache__
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 __init__.pyc
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+.Rproj.user
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+ggtree.Rproj
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+.RData
guangchuang yu authored on 03/01/2017 10:03:26
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 __pycache__
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 __init__.pyc
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-mkdocs/mysoftware
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-mkdocs/mysoftware
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treeio link

guangchuang yu authored on 03/01/2017 09:43:41
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 __pycache__
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 __init__.pyc
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+mkdocs/mysoftware
guangchuang yu authored on 11/10/2016 02:07:36
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 __init__.py
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 __pycache__
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 __init__.pyc
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-Makefile
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-TODO.md
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-appveyor.yml
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-.travis.yml
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-README.Rmd
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-docs
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-mkdocs
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remove site

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@122175 bc3139a8-67e5-0310-9ffc-ced21a209358

g.yu authored on 11/10/2016 02:01:09
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 __init__.py
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 __pycache__
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 __init__.pyc
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+Makefile
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+TODO.md
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+appveyor.yml
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+.travis.yml
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+README.Rmd
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+docs
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+mkdocs
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bug fixed in subview

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@120638 bc3139a8-67e5-0310-9ffc-ced21a209358

g.yu authored on 01/09/2016 03:51:25
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 .svn
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 __init__.py
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 __pycache__
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update docs

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@120612 bc3139a8-67e5-0310-9ffc-ced21a209358

g.yu authored on 31/08/2016 06:22:59
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 *~
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 *.Rhistory
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 .svn
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support phylip format

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@112578 bc3139a8-67e5-0310-9ffc-ced21a209358

g.yu authored on 15/01/2016 04:55:05
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 R/.DS_Store
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 vignettes/.DS_Store
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 *~
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-*.Rhistrory
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+*.Rhistory
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 .svn
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lots updates

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@111813 bc3139a8-67e5-0310-9ffc-ced21a209358

g.yu authored on 22/12/2015 04:08:02
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 .DS_Store
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 R/.DS_Store
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 vignettes/.DS_Store
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 .svn
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better geom_tree/groupClade/groupOTU implementation & annotation_clade/annotation_clade2 functions

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@106946 bc3139a8-67e5-0310-9ffc-ced21a209358

g.yu authored on 31/07/2015 10:15:38
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 R/.DS_Store
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 vignettes/.DS_Store
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+.svn
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Commit made by the Bioconductor Git-SVN bridge. Consists of 1 commit.

Commit information:

Commit id: 3a9059183d9a33cff143c90c6a09d6d566c94955

update vignette

Committed by: GuangchuangYu
Author Name: GuangchuangYu
Commit date: 2015-02-02 11:50:41 +0800
Author date: 2015-02-02 11:50:41 +0800


git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@98952 bc3139a8-67e5-0310-9ffc-ced21a209358

g.yu authored on 02/02/2015 03:51:06
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